Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
SDCBPO00560 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SDCBPO00560 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
SDCBPO00560 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
SDCBPO00560 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
SDCBPO00560 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
SDCBPO00560 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SDCBPO00560 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
SDCBPO00560 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 PXK-210ENST00000479241 2817 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 APOC3-202ENST00000375345 604 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
SDCBPO00560 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
SDCBPO00560 MIR663B-201ENST00000408361 115 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 XBP1P1-201ENST00000436573 652 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC11.77□□□□□ -0.53
SDCBPO00560 FAM86HP-204ENST00000513466 959 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC11.77□□□□□ -0.53
SDCBPO00560 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC11.77□□□□□ -0.53
SDCBPO00560 AC005324.6-201ENST00000587972 613 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC11.77□□□□□ -0.53
SDCBPO00560 KLK3-211ENST00000597483 810 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 AP000346.4-201ENST00000614827 381 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC11.77□□□□□ -0.53
SDCBPO00560 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC11.77□□□□□ -0.53
SDCBPO00560 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC11.77□□□□□ -0.53
SDCBPO00560 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 FAM90A7P-201ENST00000382628 1395 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 FAM90A23P-201ENST00000400136 1395 ntBASIC11.77□□□□□ -0.53
SDCBPO00560 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
SDCBPO00560 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC11.77□□□□□ -0.53
SDCBPO00560 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 AC107375.1-201ENST00000564464 2231 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
SDCBPO00560 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 AC092580.1-201ENST00000433998 658 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 VDAC1P1-201ENST00000439229 848 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 GOLGA2P4-201ENST00000441462 777 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
SDCBPO00560 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC11.76□□□□□ -0.53
SDCBPO00560 AC104982.3-201ENST00000581995 514 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.76□□□□□ -0.53
SDCBPO00560 RN7SL163P-201ENST00000583100 276 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 BNIP3P13-201ENST00000599968 566 ntBASIC11.76□□□□□ -0.53
SDCBPO00560 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
SDCBPO00560 PCBP2-OT1-201ENST00000634357 590 ntBASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms