Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
SOX2P48431 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 AL354877.1-201ENST00000424412 413 ntBASIC12.18□□□□□ -0.46
SOX2P48431 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC12.18□□□□□ -0.46
SOX2P48431 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 XBP1P1-201ENST00000436573 652 ntBASIC12.18□□□□□ -0.46
SOX2P48431 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.18□□□□□ -0.46
SOX2P48431 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC12.18□□□□□ -0.46
SOX2P48431 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 AC015967.2-201ENST00000624092 234 ntBASIC12.18□□□□□ -0.46
SOX2P48431 AC006435.4-201ENST00000625037 234 ntBASIC12.18□□□□□ -0.46
SOX2P48431 AL356737.1-201ENST00000634391 234 ntBASIC12.18□□□□□ -0.46
SOX2P48431 RIPK4-202ENST00000352483 4016 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 CDCA2-202ENST00000380665 3565 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
SOX2P48431 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 LIN28A-202ENST00000326279 4008 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 POC1B-GALNT4-202ENST00000548729 5436 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 C12orf56-201ENST00000333722 3936 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 AL135960.1-201ENST00000422216 4036 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
SOX2P48431 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC12.17□□□□□ -0.46
SOX2P48431 HNRNPA1P2-207ENST00000432375 960 ntBASIC12.17□□□□□ -0.46
SOX2P48431 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.17□□□□□ -0.46
SOX2P48431 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 EIF4HP1-201ENST00000453115 687 ntBASIC12.17□□□□□ -0.46
SOX2P48431 RN7SL277P-201ENST00000481521 288 ntBASIC12.17□□□□□ -0.46
SOX2P48431 CHCHD2P2-201ENST00000503744 321 ntBASIC12.17□□□□□ -0.46
SOX2P48431 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.17□□□□□ -0.46
SOX2P48431 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 MIR4741-201ENST00000579822 90 ntBASIC12.17□□□□□ -0.46
SOX2P48431 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 AL139424.3-202ENST00000641619 917 ntBASIC12.17□□□□□ -0.46
SOX2P48431 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.17□□□□□ -0.46
SOX2P48431 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SOX2P48431 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC12.17□□□□□ -0.46
SOX2P48431 AC092028.1-202ENST00000641483 3547 ntBASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms