Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 BAK1P2-201ENST00000532665 631 ntBASIC14.49□□□□□ -0.09
BDNFP23560 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.49□□□□□ -0.09
BDNFP23560 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.49□□□□□ -0.09
BDNFP23560 AL136982.5-201ENST00000605222 294 ntBASIC14.49□□□□□ -0.09
BDNFP23560 AC127024.7-201ENST00000625101 200 ntBASIC14.49□□□□□ -0.09
BDNFP23560 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.49□□□□□ -0.09
BDNFP23560 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.49□□□□□ -0.09
BDNFP23560 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
BDNFP23560 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC14.49□□□□□ -0.09
BDNFP23560 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BDNFP23560 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 PXK-210ENST00000479241 2817 ntTSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 NCLP1-201ENST00000445357 1963 ntBASIC14.48□□□□□ -0.09
BDNFP23560 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 RN7SL396P-201ENST00000471086 295 ntBASIC14.48□□□□□ -0.09
BDNFP23560 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 AREG-202ENST00000502307 956 ntTSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.48□□□□□ -0.09
BDNFP23560 AC132812.1-201ENST00000583145 892 ntBASIC14.48□□□□□ -0.09
BDNFP23560 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC14.48□□□□□ -0.09
BDNFP23560 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 BEND3P1-201ENST00000421591 1944 ntBASIC14.48□□□□□ -0.09
BDNFP23560 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC14.48□□□□□ -0.09
BDNFP23560 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
BDNFP23560 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
BDNFP23560 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 POM121L4P-202ENST00000427789 1891 ntBASIC14.47□□□□□ -0.09
BDNFP23560 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 DDC-212ENST00000615193 1674 ntTSL 3 BASIC14.47□□□□□ -0.09
BDNFP23560 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 FAM21EP-201ENST00000417804 985 ntBASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms