Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
USE1Q9NZ43 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USE1Q9NZ43 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
USE1Q9NZ43 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USE1Q9NZ43 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.7■□□□□ 0.9
USE1Q9NZ43 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.7■□□□□ 0.9
USE1Q9NZ43 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
USE1Q9NZ43 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USE1Q9NZ43 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USE1Q9NZ43 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.7■□□□□ 0.9
USE1Q9NZ43 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USE1Q9NZ43 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USE1Q9NZ43 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USE1Q9NZ43 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.68■□□□□ 0.9
USE1Q9NZ43 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USE1Q9NZ43 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USE1Q9NZ43 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USE1Q9NZ43 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.67■□□□□ 0.9
USE1Q9NZ43 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USE1Q9NZ43 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.67■□□□□ 0.9
USE1Q9NZ43 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USE1Q9NZ43 AC079630.1-202ENST00000618127 1840 ntBASIC20.67■□□□□ 0.9
USE1Q9NZ43 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
USE1Q9NZ43 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
USE1Q9NZ43 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
USE1Q9NZ43 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 AL592295.1-201ENST00000400984 884 ntBASIC20.66■□□□□ 0.9
USE1Q9NZ43 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USE1Q9NZ43 FBXW4P1-201ENST00000426721 2239 ntBASIC20.66■□□□□ 0.9
USE1Q9NZ43 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.66■□□□□ 0.9
USE1Q9NZ43 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USE1Q9NZ43 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
USE1Q9NZ43 AC131274.2-201ENST00000580697 1507 ntBASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms