Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIME1Q9H400 ABCB10P4-201ENST00000566803 2184 ntBASIC19.57■□□□□ 0.72
LIME1Q9H400 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.57■□□□□ 0.72
LIME1Q9H400 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIME1Q9H400 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.57■□□□□ 0.72
LIME1Q9H400 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.57■□□□□ 0.72
LIME1Q9H400 KRT18P5-201ENST00000436075 1291 ntBASIC19.57■□□□□ 0.72
LIME1Q9H400 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.57■□□□□ 0.72
LIME1Q9H400 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIME1Q9H400 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.57■□□□□ 0.72
LIME1Q9H400 AC233992.3-201ENST00000607491 485 ntBASIC19.57■□□□□ 0.72
LIME1Q9H400 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.57■□□□□ 0.72
LIME1Q9H400 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIME1Q9H400 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
LIME1Q9H400 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.57■□□□□ 0.72
LIME1Q9H400 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIME1Q9H400 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LIME1Q9H400 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.57■□□□□ 0.72
LIME1Q9H400 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIME1Q9H400 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.56■□□□□ 0.72
LIME1Q9H400 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIME1Q9H400 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LIME1Q9H400 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIME1Q9H400 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIME1Q9H400 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.56■□□□□ 0.72
LIME1Q9H400 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.56■□□□□ 0.72
LIME1Q9H400 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.56■□□□□ 0.72
LIME1Q9H400 AC136469.2-201ENST00000623944 1028 ntBASIC19.56■□□□□ 0.72
LIME1Q9H400 AC092437.1-201ENST00000624794 1048 ntBASIC19.56■□□□□ 0.72
LIME1Q9H400 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
LIME1Q9H400 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIME1Q9H400 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
LIME1Q9H400 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIME1Q9H400 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.55■□□□□ 0.72
LIME1Q9H400 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.55■□□□□ 0.72
LIME1Q9H400 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.55■□□□□ 0.72
LIME1Q9H400 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.55■□□□□ 0.72
LIME1Q9H400 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
LIME1Q9H400 MIR6089-201ENST00000616698 64 ntBASIC19.55■□□□□ 0.72
LIME1Q9H400 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.55■□□□□ 0.72
LIME1Q9H400 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIME1Q9H400 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
LIME1Q9H400 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.54■□□□□ 0.72
LIME1Q9H400 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.54■□□□□ 0.72
LIME1Q9H400 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LIME1Q9H400 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LIME1Q9H400 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.54■□□□□ 0.72
LIME1Q9H400 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.54■□□□□ 0.72
LIME1Q9H400 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIME1Q9H400 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIME1Q9H400 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.54■□□□□ 0.72
LIME1Q9H400 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.54■□□□□ 0.72
LIME1Q9H400 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LIME1Q9H400 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 C17orf82-201ENST00000623772 1530 ntBASIC19.53■□□□□ 0.72
LIME1Q9H400 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LIME1Q9H400 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.53■□□□□ 0.72
LIME1Q9H400 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIME1Q9H400 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.53■□□□□ 0.72
LIME1Q9H400 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.53■□□□□ 0.72
LIME1Q9H400 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
LIME1Q9H400 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.52■□□□□ 0.72
LIME1Q9H400 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIME1Q9H400 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.52■□□□□ 0.72
LIME1Q9H400 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIME1Q9H400 BX842568.3-201ENST00000418104 571 ntBASIC19.52■□□□□ 0.72
LIME1Q9H400 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.52■□□□□ 0.72
LIME1Q9H400 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIME1Q9H400 MIR3181-201ENST00000578512 73 ntBASIC19.52■□□□□ 0.72
LIME1Q9H400 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.52■□□□□ 0.72
LIME1Q9H400 DUSP8P5-201ENST00000422884 1815 ntBASIC19.52■□□□□ 0.72
LIME1Q9H400 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIME1Q9H400 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
LIME1Q9H400 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
LIME1Q9H400 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIME1Q9H400 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
LIME1Q9H400 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.51■□□□□ 0.71
LIME1Q9H400 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
LIME1Q9H400 AC004911.1-201ENST00000416316 871 ntBASIC19.51■□□□□ 0.71
LIME1Q9H400 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LIME1Q9H400 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIME1Q9H400 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms