Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.74■□□□□ 0.75
USB1Q9BQ65 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.74■□□□□ 0.75
USB1Q9BQ65 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.74■□□□□ 0.75
USB1Q9BQ65 AC099791.2-201ENST00000605725 427 ntBASIC19.74■□□□□ 0.75
USB1Q9BQ65 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USB1Q9BQ65 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USB1Q9BQ65 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.73■□□□□ 0.75
USB1Q9BQ65 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.73■□□□□ 0.75
USB1Q9BQ65 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 AC024257.2-201ENST00000549699 147 ntBASIC19.73■□□□□ 0.75
USB1Q9BQ65 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.73■□□□□ 0.75
USB1Q9BQ65 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USB1Q9BQ65 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.73■□□□□ 0.75
USB1Q9BQ65 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.72■□□□□ 0.75
USB1Q9BQ65 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USB1Q9BQ65 AC142381.2-201ENST00000566120 298 ntBASIC19.72■□□□□ 0.75
USB1Q9BQ65 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.72■□□□□ 0.75
USB1Q9BQ65 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.72■□□□□ 0.75
USB1Q9BQ65 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.72■□□□□ 0.75
USB1Q9BQ65 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USB1Q9BQ65 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.71■□□□□ 0.75
USB1Q9BQ65 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USB1Q9BQ65 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USB1Q9BQ65 FP325331.1-202ENST00000623531 1380 ntBASIC19.7■□□□□ 0.74
USB1Q9BQ65 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USB1Q9BQ65 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USB1Q9BQ65 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USB1Q9BQ65 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USB1Q9BQ65 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USB1Q9BQ65 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USB1Q9BQ65 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.7■□□□□ 0.74
USB1Q9BQ65 AC009086.3-201ENST00000623486 1008 ntBASIC19.7■□□□□ 0.74
USB1Q9BQ65 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USB1Q9BQ65 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USB1Q9BQ65 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USB1Q9BQ65 RNF165-205ENST00000588679 2904 ntBASIC19.69■□□□□ 0.74
USB1Q9BQ65 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USB1Q9BQ65 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USB1Q9BQ65 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USB1Q9BQ65 SERBP1P1-201ENST00000396021 1160 ntBASIC19.69■□□□□ 0.74
USB1Q9BQ65 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.69■□□□□ 0.74
USB1Q9BQ65 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.69■□□□□ 0.74
USB1Q9BQ65 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.69■□□□□ 0.74
USB1Q9BQ65 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
USB1Q9BQ65 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.69■□□□□ 0.74
USB1Q9BQ65 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.69■□□□□ 0.74
USB1Q9BQ65 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 SUDS3P1-201ENST00000505831 966 ntBASIC19.68■□□□□ 0.74
USB1Q9BQ65 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.68■□□□□ 0.74
USB1Q9BQ65 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USB1Q9BQ65 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USB1Q9BQ65 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USB1Q9BQ65 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms