Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NKX3-1Q99801 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX3-1Q99801 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 AF131216.4-201ENST00000638924 1588 ntBASIC19.37■□□□□ 0.69
NKX3-1Q99801 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NKX3-1Q99801 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX3-1Q99801 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX3-1Q99801 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX3-1Q99801 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX3-1Q99801 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX3-1Q99801 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX3-1Q99801 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.36■□□□□ 0.69
NKX3-1Q99801 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX3-1Q99801 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.35■□□□□ 0.69
NKX3-1Q99801 ECEL1P1-201ENST00000373592 1742 ntBASIC19.34■□□□□ 0.69
NKX3-1Q99801 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX3-1Q99801 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX3-1Q99801 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX3-1Q99801 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.34■□□□□ 0.69
NKX3-1Q99801 RARRES2P1-201ENST00000474487 481 ntBASIC19.34■□□□□ 0.69
NKX3-1Q99801 AC010980.1-201ENST00000587192 1142 ntBASIC19.34■□□□□ 0.69
NKX3-1Q99801 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX3-1Q99801 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
NKX3-1Q99801 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX3-1Q99801 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX3-1Q99801 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.33■□□□□ 0.69
NKX3-1Q99801 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX3-1Q99801 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.33■□□□□ 0.69
NKX3-1Q99801 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX3-1Q99801 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
NKX3-1Q99801 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
NKX3-1Q99801 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NKX3-1Q99801 KRT8P33-201ENST00000508125 1423 ntBASIC19.33■□□□□ 0.68
NKX3-1Q99801 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
NKX3-1Q99801 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.32■□□□□ 0.68
NKX3-1Q99801 MIR4281-201ENST00000580852 62 ntBASIC19.32■□□□□ 0.68
NKX3-1Q99801 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.32■□□□□ 0.68
NKX3-1Q99801 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX3-1Q99801 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms