Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
COL12A1Q99715 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL12A1Q99715 MFSD11-216ENST00000590393 1141 ntBASIC19.8■□□□□ 0.76
COL12A1Q99715 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL12A1Q99715 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 DUSP5P2-201ENST00000426873 1033 ntBASIC19.79■□□□□ 0.76
COL12A1Q99715 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.79■□□□□ 0.76
COL12A1Q99715 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 ITM2C-210ENST00000620962 501 ntBASIC19.79■□□□□ 0.76
COL12A1Q99715 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL12A1Q99715 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL12A1Q99715 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL12A1Q99715 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.79■□□□□ 0.76
COL12A1Q99715 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.79■□□□□ 0.76
COL12A1Q99715 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL12A1Q99715 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.79■□□□□ 0.76
COL12A1Q99715 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.78■□□□□ 0.76
COL12A1Q99715 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.78■□□□□ 0.76
COL12A1Q99715 AC092118.2-201ENST00000613495 667 ntBASIC19.78■□□□□ 0.76
COL12A1Q99715 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL12A1Q99715 KRT19P1-201ENST00000405746 1186 ntBASIC19.78■□□□□ 0.76
COL12A1Q99715 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.78■□□□□ 0.76
COL12A1Q99715 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.78■□□□□ 0.76
COL12A1Q99715 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.78■□□□□ 0.76
COL12A1Q99715 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.77■□□□□ 0.76
COL12A1Q99715 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.77■□□□□ 0.76
COL12A1Q99715 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL12A1Q99715 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL12A1Q99715 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL12A1Q99715 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.77■□□□□ 0.76
COL12A1Q99715 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.77■□□□□ 0.76
COL12A1Q99715 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.77■□□□□ 0.76
COL12A1Q99715 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL12A1Q99715 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL12A1Q99715 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.77■□□□□ 0.75
COL12A1Q99715 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL12A1Q99715 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL12A1Q99715 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.77■□□□□ 0.75
COL12A1Q99715 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
COL12A1Q99715 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.77■□□□□ 0.75
COL12A1Q99715 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL12A1Q99715 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL12A1Q99715 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL12A1Q99715 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL12A1Q99715 AC009086.3-201ENST00000623486 1008 ntBASIC19.76■□□□□ 0.75
COL12A1Q99715 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL12A1Q99715 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL12A1Q99715 ECEL1P3-201ENST00000427961 737 ntBASIC19.76■□□□□ 0.75
COL12A1Q99715 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL12A1Q99715 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.76■□□□□ 0.75
COL12A1Q99715 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.76■□□□□ 0.75
COL12A1Q99715 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL12A1Q99715 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL12A1Q99715 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.75■□□□□ 0.75
COL12A1Q99715 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL12A1Q99715 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
COL12A1Q99715 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.74■□□□□ 0.75
COL12A1Q99715 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.74■□□□□ 0.75
COL12A1Q99715 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL12A1Q99715 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.74■□□□□ 0.75
COL12A1Q99715 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL12A1Q99715 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.74■□□□□ 0.75
COL12A1Q99715 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL12A1Q99715 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL12A1Q99715 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL12A1Q99715 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL12A1Q99715 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms