Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 pRNA.11-201ENST00000618423 90 ntBASIC22.3■■□□□ 1.16
LYSMD1Q96S90 pRNA.13-201ENST00000619112 90 ntBASIC22.3■■□□□ 1.16
LYSMD1Q96S90 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LYSMD1Q96S90 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 AC096631.2-201ENST00000436136 790 ntBASIC22.29■■□□□ 1.16
LYSMD1Q96S90 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LYSMD1Q96S90 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 AC110285.6-201ENST00000617652 491 ntBASIC22.28■■□□□ 1.16
LYSMD1Q96S90 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LYSMD1Q96S90 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 AL139246.5-201ENST00000606645 996 ntBASIC22.27■■□□□ 1.16
LYSMD1Q96S90 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
LYSMD1Q96S90 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 AC136469.2-201ENST00000623944 1028 ntBASIC22.26■■□□□ 1.15
LYSMD1Q96S90 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.26■■□□□ 1.15
LYSMD1Q96S90 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 DUSP8P5-201ENST00000422884 1815 ntBASIC22.26■■□□□ 1.15
LYSMD1Q96S90 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LYSMD1Q96S90 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 AL136162.1-201ENST00000607711 1078 ntBASIC22.25■■□□□ 1.15
LYSMD1Q96S90 AC106739.1-201ENST00000617035 715 ntBASIC22.25■■□□□ 1.15
LYSMD1Q96S90 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 AC133637.1-201ENST00000624115 1537 ntBASIC22.25■■□□□ 1.15
LYSMD1Q96S90 AC135279.3-201ENST00000610945 1311 ntBASIC22.25■■□□□ 1.15
LYSMD1Q96S90 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LYSMD1Q96S90 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LYSMD1Q96S90 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 AC024257.2-201ENST00000549699 147 ntBASIC22.23■■□□□ 1.15
LYSMD1Q96S90 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 AC133561.4-201ENST00000566112 224 ntBASIC22.23■■□□□ 1.15
LYSMD1Q96S90 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.23■■□□□ 1.15
LYSMD1Q96S90 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms