Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTHRC1Q96CG8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.78■□□□□ 0.92
CTHRC1Q96CG8 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 SRD5A1P1-201ENST00000442297 786 ntBASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.77■□□□□ 0.92
CTHRC1Q96CG8 C9orf163-202ENST00000624034 2573 ntBASIC20.77■□□□□ 0.91
CTHRC1Q96CG8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.76■□□□□ 0.91
CTHRC1Q96CG8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 AL499627.2-201ENST00000606283 725 ntBASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.75■□□□□ 0.91
CTHRC1Q96CG8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 AC099791.2-201ENST00000605725 427 ntBASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.74■□□□□ 0.91
CTHRC1Q96CG8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 AC068473.5-201ENST00000616428 2072 ntBASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 AC009086.3-201ENST00000623486 1008 ntBASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CTHRC1Q96CG8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 AC092171.4-201ENST00000609130 632 ntBASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTHRC1Q96CG8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 AC006455.2-201ENST00000429931 906 ntBASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTHRC1Q96CG8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms