Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
TTC28Q96AY4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TTC28Q96AY4 AL158047.1-201ENST00000445918 881 ntBASIC23.18■■□□□ 1.3
TTC28Q96AY4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
TTC28Q96AY4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TTC28Q96AY4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.18■■□□□ 1.3
TTC28Q96AY4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.18■■□□□ 1.3
TTC28Q96AY4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
TTC28Q96AY4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.18■■□□□ 1.3
TTC28Q96AY4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TTC28Q96AY4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
TTC28Q96AY4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TTC28Q96AY4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TTC28Q96AY4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
TTC28Q96AY4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.17■■□□□ 1.3
TTC28Q96AY4 ESRRAP1-201ENST00000400596 1257 ntBASIC23.17■■□□□ 1.3
TTC28Q96AY4 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.17■■□□□ 1.3
TTC28Q96AY4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TTC28Q96AY4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TTC28Q96AY4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TTC28Q96AY4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TTC28Q96AY4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
TTC28Q96AY4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
TTC28Q96AY4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
TTC28Q96AY4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TTC28Q96AY4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.15■■□□□ 1.3
TTC28Q96AY4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TTC28Q96AY4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
TTC28Q96AY4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
TTC28Q96AY4 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TTC28Q96AY4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.15■■□□□ 1.3
TTC28Q96AY4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
TTC28Q96AY4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.14■■□□□ 1.3
TTC28Q96AY4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.3
TTC28Q96AY4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
TTC28Q96AY4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
TTC28Q96AY4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TTC28Q96AY4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TTC28Q96AY4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TTC28Q96AY4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.14■■□□□ 1.29
TTC28Q96AY4 AC105233.4-201ENST00000642045 216 ntBASIC23.14■■□□□ 1.29
TTC28Q96AY4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TTC28Q96AY4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 CNN2P6-201ENST00000439038 900 ntBASIC23.13■■□□□ 1.29
TTC28Q96AY4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
TTC28Q96AY4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.13■■□□□ 1.29
TTC28Q96AY4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 AC142381.4-202ENST00000563973 229 ntBASIC23.13■■□□□ 1.29
TTC28Q96AY4 AC010525.1-201ENST00000585559 441 ntBASIC23.13■■□□□ 1.29
TTC28Q96AY4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
TTC28Q96AY4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
TTC28Q96AY4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.12■■□□□ 1.29
TTC28Q96AY4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TTC28Q96AY4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TTC28Q96AY4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TTC28Q96AY4 UNC93B4-201ENST00000505679 747 ntBASIC23.12■■□□□ 1.29
TTC28Q96AY4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.12■■□□□ 1.29
TTC28Q96AY4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.12■■□□□ 1.29
TTC28Q96AY4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.12■■□□□ 1.29
TTC28Q96AY4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC23.11■■□□□ 1.29
TTC28Q96AY4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
TTC28Q96AY4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.11■■□□□ 1.29
TTC28Q96AY4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.11■■□□□ 1.29
TTC28Q96AY4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
TTC28Q96AY4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TTC28Q96AY4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.1■■□□□ 1.29
TTC28Q96AY4 AC133552.2-202ENST00000575694 574 ntBASIC23.1■■□□□ 1.29
TTC28Q96AY4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TTC28Q96AY4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.1■■□□□ 1.29
TTC28Q96AY4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TTC28Q96AY4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TTC28Q96AY4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.1■■□□□ 1.29
TTC28Q96AY4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TTC28Q96AY4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms