Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC29.22■■■□□ 2.27
RTF1Q92541 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC29.22■■■□□ 2.27
RTF1Q92541 SLC47A1P1-202ENST00000449666 945 ntBASIC29.22■■■□□ 2.27
RTF1Q92541 AC126544.1-201ENST00000580842 1059 ntBASIC29.22■■■□□ 2.27
RTF1Q92541 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC29.22■■■□□ 2.27
RTF1Q92541 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
RTF1Q92541 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
RTF1Q92541 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
RTF1Q92541 AC079630.1-202ENST00000618127 1840 ntBASIC29.21■■■□□ 2.27
RTF1Q92541 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.27
RTF1Q92541 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
RTF1Q92541 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
RTF1Q92541 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
RTF1Q92541 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
RTF1Q92541 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.2■■■□□ 2.26
RTF1Q92541 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC29.2■■■□□ 2.26
RTF1Q92541 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RTF1Q92541 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RTF1Q92541 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RTF1Q92541 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RTF1Q92541 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
RTF1Q92541 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC29.18■■■□□ 2.26
RTF1Q92541 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
RTF1Q92541 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC29.18■■■□□ 2.26
RTF1Q92541 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 RARRES2P6-201ENST00000567333 442 ntBASIC29.18■■■□□ 2.26
RTF1Q92541 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC29.18■■■□□ 2.26
RTF1Q92541 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
RTF1Q92541 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.18■■■□□ 2.26
RTF1Q92541 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RTF1Q92541 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC29.17■■■□□ 2.26
RTF1Q92541 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC29.17■■■□□ 2.26
RTF1Q92541 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.17■■■□□ 2.26
RTF1Q92541 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC29.17■■■□□ 2.26
RTF1Q92541 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC29.17■■■□□ 2.26
RTF1Q92541 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
RTF1Q92541 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
RTF1Q92541 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
RTF1Q92541 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
RTF1Q92541 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
RTF1Q92541 IRS3P-201ENST00000223076 1006 ntBASIC29.16■■■□□ 2.26
RTF1Q92541 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.16■■■□□ 2.26
RTF1Q92541 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC29.16■■■□□ 2.26
RTF1Q92541 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC29.16■■■□□ 2.26
RTF1Q92541 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
RTF1Q92541 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC29.15■■■□□ 2.26
RTF1Q92541 RHOF-204ENST00000537265 699 ntTSL 2 BASIC29.15■■■□□ 2.26
RTF1Q92541 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
RTF1Q92541 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC29.15■■■□□ 2.26
RTF1Q92541 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
RTF1Q92541 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC29.14■■■□□ 2.26
RTF1Q92541 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
RTF1Q92541 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.25
RTF1Q92541 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
RTF1Q92541 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
RTF1Q92541 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC29.13■■■□□ 2.25
RTF1Q92541 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
RTF1Q92541 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
RTF1Q92541 OR2I1P-207ENST00000453522 948 ntBASIC29.13■■■□□ 2.25
RTF1Q92541 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC29.13■■■□□ 2.25
RTF1Q92541 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
RTF1Q92541 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
RTF1Q92541 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
RTF1Q92541 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC29.12■■■□□ 2.25
RTF1Q92541 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
RTF1Q92541 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
RTF1Q92541 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.12■■■□□ 2.25
RTF1Q92541 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC29.11■■■□□ 2.25
RTF1Q92541 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
RTF1Q92541 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
RTF1Q92541 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
RTF1Q92541 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.11■■■□□ 2.25
RTF1Q92541 AC010525.1-201ENST00000585559 441 ntBASIC29.11■■■□□ 2.25
RTF1Q92541 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
RTF1Q92541 H19-210ENST00000439725 1929 ntTSL 2 BASIC29.11■■■□□ 2.25
RTF1Q92541 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC29.11■■■□□ 2.25
RTF1Q92541 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RTF1Q92541 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RTF1Q92541 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms