Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 AP006294.2-201ENST00000641667 209 ntBASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 AC133041.1-202ENST00000642053 222 ntBASIC26.82■■□□□ 1.88
SMC1BQ8NDV3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 CBFB-203ENST00000561924 584 ntTSL 5 BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SMC1BQ8NDV3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.8■■□□□ 1.88
SMC1BQ8NDV3 PRORSD1P-201ENST00000295112 541 ntBASIC26.8■■□□□ 1.88
SMC1BQ8NDV3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.8■■□□□ 1.88
SMC1BQ8NDV3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC26.8■■□□□ 1.88
SMC1BQ8NDV3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC26.8■■□□□ 1.88
SMC1BQ8NDV3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SMC1BQ8NDV3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 MFSD11-216ENST00000590393 1141 ntBASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.78■■□□□ 1.88
SMC1BQ8NDV3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 AC073210.2-201ENST00000430369 194 ntBASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 TESC-206ENST00000541210 936 ntTSL 3 BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 AC231657.2-201ENST00000624556 255 ntBASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SMC1BQ8NDV3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
SMC1BQ8NDV3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
SMC1BQ8NDV3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 RPS2P52-201ENST00000469610 820 ntBASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SMC1BQ8NDV3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 AC139426.1-201ENST00000568218 2529 ntBASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 AC005181.1-201ENST00000604782 1256 ntBASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SMC1BQ8NDV3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SMC1BQ8NDV3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SMC1BQ8NDV3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
SMC1BQ8NDV3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms