Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZIC4Q8N9L1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.82■□□□□ 0.76
ZIC4Q8N9L1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.81■□□□□ 0.76
ZIC4Q8N9L1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 AC009086.3-201ENST00000623486 1008 ntBASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.8■□□□□ 0.76
ZIC4Q8N9L1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.79■□□□□ 0.76
ZIC4Q8N9L1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
ZIC4Q8N9L1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 AL499627.2-201ENST00000606283 725 ntBASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.77■□□□□ 0.76
ZIC4Q8N9L1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
ZIC4Q8N9L1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZIC4Q8N9L1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 MIR3181-201ENST00000578512 73 ntBASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 AC092171.4-201ENST00000609130 632 ntBASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZIC4Q8N9L1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ZIC4Q8N9L1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 SERBP1P1-201ENST00000396021 1160 ntBASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 pRNA.6-201ENST00000610482 90 ntBASIC19.74■□□□□ 0.75
ZIC4Q8N9L1 pRNA.5-201ENST00000612139 90 ntBASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms