Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 AC142381.3-201ENST00000568208 1670 ntBASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
USHBP1Q8N6Y0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 CCDC92B-201ENST00000575506 885 ntBASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
USHBP1Q8N6Y0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC29.7■■■□□ 2.35
USHBP1Q8N6Y0 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.34
USHBP1Q8N6Y0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC29.7■■■□□ 2.34
USHBP1Q8N6Y0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
USHBP1Q8N6Y0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 OR2I1P-207ENST00000453522 948 ntBASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 DUX4L4-201ENST00000566884 1269 ntBASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 AL137784.2-201ENST00000607332 1000 ntBASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC29.69■■■□□ 2.34
USHBP1Q8N6Y0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 AC123595.1-201ENST00000440769 1046 ntBASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
USHBP1Q8N6Y0 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
USHBP1Q8N6Y0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USHBP1Q8N6Y0 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 AL354811.1-201ENST00000610286 706 ntBASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USHBP1Q8N6Y0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 AC144652.1-201ENST00000609974 1624 ntBASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC29.64■■■□□ 2.34
USHBP1Q8N6Y0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms