Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.34■■□□□ 1.97
USP48Q86UV5 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC27.34■■□□□ 1.97
USP48Q86UV5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.34■■□□□ 1.97
USP48Q86UV5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP48Q86UV5 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC27.33■■□□□ 1.97
USP48Q86UV5 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC27.33■■□□□ 1.97
USP48Q86UV5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP48Q86UV5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC27.33■■□□□ 1.97
USP48Q86UV5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC27.33■■□□□ 1.97
USP48Q86UV5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC27.33■■□□□ 1.97
USP48Q86UV5 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC27.33■■□□□ 1.97
USP48Q86UV5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC27.33■■□□□ 1.97
USP48Q86UV5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP48Q86UV5 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
USP48Q86UV5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
USP48Q86UV5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
USP48Q86UV5 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC27.32■■□□□ 1.96
USP48Q86UV5 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP48Q86UV5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP48Q86UV5 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USP48Q86UV5 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
USP48Q86UV5 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP48Q86UV5 NME4-202ENST00000382940 766 ntTSL 3 BASIC27.31■■□□□ 1.96
USP48Q86UV5 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC27.31■■□□□ 1.96
USP48Q86UV5 AC126544.1-201ENST00000580842 1059 ntBASIC27.31■■□□□ 1.96
USP48Q86UV5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC27.31■■□□□ 1.96
USP48Q86UV5 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP48Q86UV5 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
USP48Q86UV5 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USP48Q86UV5 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
USP48Q86UV5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC27.3■■□□□ 1.96
USP48Q86UV5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC27.3■■□□□ 1.96
USP48Q86UV5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC27.3■■□□□ 1.96
USP48Q86UV5 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.3■■□□□ 1.96
USP48Q86UV5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.29■■□□□ 1.96
USP48Q86UV5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
USP48Q86UV5 AC009086.3-201ENST00000623486 1008 ntBASIC27.29■■□□□ 1.96
USP48Q86UV5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC27.29■■□□□ 1.96
USP48Q86UV5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
USP48Q86UV5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
USP48Q86UV5 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.29■■□□□ 1.96
USP48Q86UV5 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.28■■□□□ 1.96
USP48Q86UV5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC27.28■■□□□ 1.96
USP48Q86UV5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC27.28■■□□□ 1.96
USP48Q86UV5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC27.28■■□□□ 1.96
USP48Q86UV5 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.28■■□□□ 1.96
USP48Q86UV5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.28■■□□□ 1.96
USP48Q86UV5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
USP48Q86UV5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC27.28■■□□□ 1.96
USP48Q86UV5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
USP48Q86UV5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP48Q86UV5 TSPY26P-201ENST00000476365 1326 ntBASIC27.27■■□□□ 1.96
USP48Q86UV5 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
USP48Q86UV5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USP48Q86UV5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC27.27■■□□□ 1.96
USP48Q86UV5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
USP48Q86UV5 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USP48Q86UV5 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
USP48Q86UV5 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
USP48Q86UV5 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.26■■□□□ 1.95
USP48Q86UV5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC27.26■■□□□ 1.95
USP48Q86UV5 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP48Q86UV5 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP48Q86UV5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC27.26■■□□□ 1.95
USP48Q86UV5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
USP48Q86UV5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP48Q86UV5 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
USP48Q86UV5 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP48Q86UV5 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP48Q86UV5 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
USP48Q86UV5 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
USP48Q86UV5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.25■■□□□ 1.95
USP48Q86UV5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC27.25■■□□□ 1.95
USP48Q86UV5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC27.25■■□□□ 1.95
USP48Q86UV5 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
USP48Q86UV5 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
USP48Q86UV5 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP48Q86UV5 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.24■■□□□ 1.95
USP48Q86UV5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC27.24■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms