Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.27■■□□□ 1
PPP4R4Q6NUP7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PPP4R4Q6NUP7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PPP4R4Q6NUP7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PPP4R4Q6NUP7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 AC242852.2-201ENST00000615738 1807 ntBASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PPP4R4Q6NUP7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 AL137060.1-201ENST00000618151 2648 ntBASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 AC103834.1-201ENST00000520383 144 ntBASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
PPP4R4Q6NUP7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.23■□□□□ 0.99
PPP4R4Q6NUP7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 MIR4508-201ENST00000584178 70 ntBASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 AL031848.2-201ENST00000607670 837 ntBASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
PPP4R4Q6NUP7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 AC019171.1-201ENST00000601251 1056 ntBASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.21■□□□□ 0.99
PPP4R4Q6NUP7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
PPP4R4Q6NUP7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PPP4R4Q6NUP7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 AC103724.3-201ENST00000564481 992 ntBASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 AL451085.2-201ENST00000605085 799 ntBASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 ESRRAP2-201ENST00000418437 1549 ntBASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PPP4R4Q6NUP7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms