Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.34■■□□□ 1.33
RNF43Q68DV7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RNF43Q68DV7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
RNF43Q68DV7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.33■■□□□ 1.33
RNF43Q68DV7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.33■■□□□ 1.33
RNF43Q68DV7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RNF43Q68DV7 UNC93B3-201ENST00000308076 687 ntBASIC23.33■■□□□ 1.33
RNF43Q68DV7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RNF43Q68DV7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
RNF43Q68DV7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
RNF43Q68DV7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
RNF43Q68DV7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RNF43Q68DV7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 C17orf82-201ENST00000623772 1530 ntBASIC23.32■■□□□ 1.32
RNF43Q68DV7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.32■■□□□ 1.32
RNF43Q68DV7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RNF43Q68DV7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.31■■□□□ 1.32
RNF43Q68DV7 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.31■■□□□ 1.32
RNF43Q68DV7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.31■■□□□ 1.32
RNF43Q68DV7 SUDS3P1-201ENST00000505831 966 ntBASIC23.31■■□□□ 1.32
RNF43Q68DV7 AL136162.1-201ENST00000607711 1078 ntBASIC23.31■■□□□ 1.32
RNF43Q68DV7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.31■■□□□ 1.32
RNF43Q68DV7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
RNF43Q68DV7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RNF43Q68DV7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.3■■□□□ 1.32
RNF43Q68DV7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.3■■□□□ 1.32
RNF43Q68DV7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.3■■□□□ 1.32
RNF43Q68DV7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.3■■□□□ 1.32
RNF43Q68DV7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.3■■□□□ 1.32
RNF43Q68DV7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RNF43Q68DV7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RNF43Q68DV7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.29■■□□□ 1.32
RNF43Q68DV7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RNF43Q68DV7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.29■■□□□ 1.32
RNF43Q68DV7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
RNF43Q68DV7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.29■■□□□ 1.32
RNF43Q68DV7 AL031432.3-201ENST00000607698 485 ntBASIC23.29■■□□□ 1.32
RNF43Q68DV7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RNF43Q68DV7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RNF43Q68DV7 C9orf163-202ENST00000624034 2573 ntBASIC23.29■■□□□ 1.32
RNF43Q68DV7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
RNF43Q68DV7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.28■■□□□ 1.32
RNF43Q68DV7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.28■■□□□ 1.32
RNF43Q68DV7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.28■■□□□ 1.32
RNF43Q68DV7 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.28■■□□□ 1.32
RNF43Q68DV7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
RNF43Q68DV7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RNF43Q68DV7 AL117328.2-201ENST00000624617 1940 ntBASIC23.27■■□□□ 1.32
RNF43Q68DV7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.27■■□□□ 1.32
RNF43Q68DV7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RNF43Q68DV7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
RNF43Q68DV7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF43Q68DV7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF43Q68DV7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RNF43Q68DV7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RNF43Q68DV7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
RNF43Q68DV7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF43Q68DV7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.26■■□□□ 1.31
RNF43Q68DV7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RNF43Q68DV7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RNF43Q68DV7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RNF43Q68DV7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF43Q68DV7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
RNF43Q68DV7 EDA-201ENST00000338901 1233 ntBASIC23.25■■□□□ 1.31
RNF43Q68DV7 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.25■■□□□ 1.31
RNF43Q68DV7 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
RNF43Q68DV7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RNF43Q68DV7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms