Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
RC3H1Q5TC82 KRT18P61-201ENST00000585825 1298 ntBASIC28.58■■■□□ 2.17
RC3H1Q5TC82 RAP2CP1-201ENST00000605103 478 ntBASIC28.58■■■□□ 2.17
RC3H1Q5TC82 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.58■■■□□ 2.17
RC3H1Q5TC82 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
RC3H1Q5TC82 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.58■■■□□ 2.17
RC3H1Q5TC82 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 AC080038.1-201ENST00000611274 1154 ntBASIC28.57■■■□□ 2.16
RC3H1Q5TC82 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.57■■■□□ 2.16
RC3H1Q5TC82 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.56■■■□□ 2.16
RC3H1Q5TC82 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
RC3H1Q5TC82 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.54■■■□□ 2.16
RC3H1Q5TC82 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.53■■■□□ 2.16
RC3H1Q5TC82 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.52■■■□□ 2.16
RC3H1Q5TC82 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
RC3H1Q5TC82 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.51■■■□□ 2.15
RC3H1Q5TC82 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
RC3H1Q5TC82 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
RC3H1Q5TC82 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 CDCA4P2-201ENST00000441182 718 ntBASIC28.5■■■□□ 2.15
RC3H1Q5TC82 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 TPRG1LP1-201ENST00000598702 760 ntBASIC28.5■■■□□ 2.15
RC3H1Q5TC82 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.5■■■□□ 2.15
RC3H1Q5TC82 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RC3H1Q5TC82 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.49■■■□□ 2.15
RC3H1Q5TC82 GAS2L1P2-201ENST00000436355 1356 ntBASIC28.49■■■□□ 2.15
RC3H1Q5TC82 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
RC3H1Q5TC82 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms