Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.84■■□□□ 1.41
USP41Q3LFD5 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.83■■□□□ 1.41
USP41Q3LFD5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.83■■□□□ 1.41
USP41Q3LFD5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 AC144652.1-201ENST00000609974 1624 ntBASIC23.83■■□□□ 1.41
USP41Q3LFD5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP41Q3LFD5 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
USP41Q3LFD5 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
USP41Q3LFD5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.83■■□□□ 1.4
USP41Q3LFD5 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP41Q3LFD5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP41Q3LFD5 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP41Q3LFD5 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP41Q3LFD5 YBX1P1-201ENST00000445822 960 ntBASIC23.82■■□□□ 1.4
USP41Q3LFD5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 AL358852.1-201ENST00000623174 1268 ntBASIC23.82■■□□□ 1.4
USP41Q3LFD5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 AC020928.2-201ENST00000588717 2197 ntBASIC23.82■■□□□ 1.4
USP41Q3LFD5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP41Q3LFD5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP41Q3LFD5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
USP41Q3LFD5 LINC01529-204ENST00000636474 1715 ntBASIC23.81■■□□□ 1.4
USP41Q3LFD5 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP41Q3LFD5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP41Q3LFD5 MIR572-201ENST00000384983 95 ntBASIC23.81■■□□□ 1.4
USP41Q3LFD5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.81■■□□□ 1.4
USP41Q3LFD5 AC034268.1-201ENST00000441047 882 ntBASIC23.81■■□□□ 1.4
USP41Q3LFD5 OR2I1P-207ENST00000453522 948 ntBASIC23.81■■□□□ 1.4
USP41Q3LFD5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP41Q3LFD5 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.81■■□□□ 1.4
USP41Q3LFD5 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP41Q3LFD5 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
USP41Q3LFD5 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.8■■□□□ 1.4
USP41Q3LFD5 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.8■■□□□ 1.4
USP41Q3LFD5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.8■■□□□ 1.4
USP41Q3LFD5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.8■■□□□ 1.4
USP41Q3LFD5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
USP41Q3LFD5 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP41Q3LFD5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.79■■□□□ 1.4
USP41Q3LFD5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.79■■□□□ 1.4
USP41Q3LFD5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 AC010525.1-201ENST00000585559 441 ntBASIC23.79■■□□□ 1.4
USP41Q3LFD5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23.79■■□□□ 1.4
USP41Q3LFD5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.79■■□□□ 1.4
USP41Q3LFD5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP41Q3LFD5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP41Q3LFD5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP41Q3LFD5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.78■■□□□ 1.4
USP41Q3LFD5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP41Q3LFD5 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP41Q3LFD5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP41Q3LFD5 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
USP41Q3LFD5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP41Q3LFD5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP41Q3LFD5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP41Q3LFD5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP41Q3LFD5 AC027612.3-201ENST00000413684 1047 ntBASIC23.76■■□□□ 1.39
USP41Q3LFD5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms