Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC16.7■□□□□ 0.26
FOXA3P55318 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA3P55318 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
FOXA3P55318 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
FOXA3P55318 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC16.7■□□□□ 0.26
FOXA3P55318 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA3P55318 AC139530.1-201ENST00000575312 1977 ntBASIC16.69■□□□□ 0.26
FOXA3P55318 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA3P55318 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
FOXA3P55318 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
FOXA3P55318 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 RP9P-202ENST00000450133 1212 ntBASIC16.69■□□□□ 0.26
FOXA3P55318 RNF166-209ENST00000567844 633 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA3P55318 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
FOXA3P55318 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA3P55318 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC16.69■□□□□ 0.26
FOXA3P55318 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 REST-210ENST00000638187 1334 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA3P55318 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA3P55318 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
FOXA3P55318 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA3P55318 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 AC090877.2-201ENST00000558441 1738 ntBASIC16.68■□□□□ 0.26
FOXA3P55318 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC16.68■□□□□ 0.26
FOXA3P55318 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
FOXA3P55318 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA3P55318 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 CR559946.2-201ENST00000623684 991 ntBASIC16.68■□□□□ 0.26
FOXA3P55318 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA3P55318 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC16.68■□□□□ 0.26
FOXA3P55318 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA3P55318 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
FOXA3P55318 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA3P55318 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
FOXA3P55318 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA3P55318 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA3P55318 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA3P55318 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA3P55318 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
FOXA3P55318 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA3P55318 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA3P55318 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
FOXA3P55318 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA3P55318 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA3P55318 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA3P55318 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA3P55318 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA3P55318 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA3P55318 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA3P55318 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA3P55318 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA3P55318 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA3P55318 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA3P55318 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
FOXA3P55318 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA3P55318 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA3P55318 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA3P55318 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA3P55318 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
FOXA3P55318 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC16.64■□□□□ 0.25
FOXA3P55318 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms