Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX2P48431 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX2P48431 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX2P48431 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX2P48431 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX2P48431 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.57■□□□□ 0.72
SOX2P48431 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.57■□□□□ 0.72
SOX2P48431 AC139795.1-202ENST00000500444 432 ntBASIC19.57■□□□□ 0.72
SOX2P48431 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.57■□□□□ 0.72
SOX2P48431 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.57■□□□□ 0.72
SOX2P48431 AC242852.2-201ENST00000615738 1807 ntBASIC19.57■□□□□ 0.72
SOX2P48431 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.57■□□□□ 0.72
SOX2P48431 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX2P48431 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SOX2P48431 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 DUX4L18-201ENST00000553347 1267 ntBASIC19.56■□□□□ 0.72
SOX2P48431 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SOX2P48431 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX2P48431 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 ESRRAP2-201ENST00000418437 1549 ntBASIC19.56■□□□□ 0.72
SOX2P48431 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX2P48431 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX2P48431 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.55■□□□□ 0.72
SOX2P48431 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SOX2P48431 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
SOX2P48431 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
SOX2P48431 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SOX2P48431 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX2P48431 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.54■□□□□ 0.72
SOX2P48431 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.54■□□□□ 0.72
SOX2P48431 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 AC022616.5-201ENST00000518796 181 ntBASIC19.54■□□□□ 0.72
SOX2P48431 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX2P48431 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX2P48431 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SOX2P48431 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SOX2P48431 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX2P48431 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
SOX2P48431 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX2P48431 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX2P48431 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX2P48431 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX2P48431 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SOX2P48431 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX2P48431 AC120024.1-201ENST00000562672 995 ntBASIC19.53■□□□□ 0.72
SOX2P48431 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SOX2P48431 AC137767.1-201ENST00000602918 1920 ntBASIC19.53■□□□□ 0.72
SOX2P48431 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX2P48431 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX2P48431 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
SOX2P48431 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.52■□□□□ 0.72
SOX2P48431 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SOX2P48431 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX2P48431 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX2P48431 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SOX2P48431 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX2P48431 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.52■□□□□ 0.72
SOX2P48431 AC007375.3-201ENST00000600936 2314 ntBASIC19.52■□□□□ 0.71
SOX2P48431 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SOX2P48431 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX2P48431 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.51■□□□□ 0.71
SOX2P48431 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX2P48431 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.51■□□□□ 0.71
SOX2P48431 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX2P48431 AL353803.4-201ENST00000565882 1934 ntBASIC19.51■□□□□ 0.71
SOX2P48431 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SOX2P48431 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SOX2P48431 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms