Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CXCL12P48061 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.51■■□□□ 1.19
CXCL12P48061 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.5■■□□□ 1.19
CXCL12P48061 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CXCL12P48061 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.5■■□□□ 1.19
CXCL12P48061 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CXCL12P48061 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CXCL12P48061 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CXCL12P48061 RAP2CP1-201ENST00000605103 478 ntBASIC22.5■■□□□ 1.19
CXCL12P48061 AC073111.5-205ENST00000641717 521 ntBASIC22.5■■□□□ 1.19
CXCL12P48061 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CXCL12P48061 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CXCL12P48061 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.5■■□□□ 1.19
CXCL12P48061 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CXCL12P48061 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CXCL12P48061 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CXCL12P48061 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.49■■□□□ 1.19
CXCL12P48061 DUX4L4-201ENST00000566884 1269 ntBASIC22.49■■□□□ 1.19
CXCL12P48061 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
CXCL12P48061 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.49■■□□□ 1.19
CXCL12P48061 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CXCL12P48061 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CXCL12P48061 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.48■■□□□ 1.19
CXCL12P48061 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.48■■□□□ 1.19
CXCL12P48061 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CXCL12P48061 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.48■■□□□ 1.19
CXCL12P48061 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.48■■□□□ 1.19
CXCL12P48061 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CXCL12P48061 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CXCL12P48061 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
CXCL12P48061 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.47■■□□□ 1.19
CXCL12P48061 AC026185.1-201ENST00000445748 174 ntBASIC22.47■■□□□ 1.19
CXCL12P48061 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.47■■□□□ 1.19
CXCL12P48061 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.47■■□□□ 1.19
CXCL12P48061 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.47■■□□□ 1.19
CXCL12P48061 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.47■■□□□ 1.19
CXCL12P48061 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CXCL12P48061 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CXCL12P48061 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CXCL12P48061 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.46■■□□□ 1.19
CXCL12P48061 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.46■■□□□ 1.19
CXCL12P48061 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.46■■□□□ 1.19
CXCL12P48061 KRT18P61-201ENST00000585825 1298 ntBASIC22.46■■□□□ 1.19
CXCL12P48061 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.46■■□□□ 1.19
CXCL12P48061 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.46■■□□□ 1.19
CXCL12P48061 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
CXCL12P48061 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CXCL12P48061 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.45■■□□□ 1.18
CXCL12P48061 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CXCL12P48061 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CXCL12P48061 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.45■■□□□ 1.18
CXCL12P48061 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.45■■□□□ 1.18
CXCL12P48061 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.45■■□□□ 1.18
CXCL12P48061 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.45■■□□□ 1.18
CXCL12P48061 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.45■■□□□ 1.18
CXCL12P48061 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
CXCL12P48061 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.45■■□□□ 1.18
CXCL12P48061 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CXCL12P48061 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.44■■□□□ 1.18
CXCL12P48061 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CXCL12P48061 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.44■■□□□ 1.18
CXCL12P48061 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.44■■□□□ 1.18
CXCL12P48061 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.44■■□□□ 1.18
CXCL12P48061 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.44■■□□□ 1.18
CXCL12P48061 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.44■■□□□ 1.18
CXCL12P48061 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.44■■□□□ 1.18
CXCL12P48061 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
CXCL12P48061 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CXCL12P48061 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.44■■□□□ 1.18
CXCL12P48061 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CXCL12P48061 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.44■■□□□ 1.18
CXCL12P48061 AL121749.1-202ENST00000609313 2153 ntBASIC22.43■■□□□ 1.18
CXCL12P48061 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.43■■□□□ 1.18
CXCL12P48061 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CXCL12P48061 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.43■■□□□ 1.18
CXCL12P48061 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CXCL12P48061 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CXCL12P48061 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CXCL12P48061 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CXCL12P48061 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CXCL12P48061 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.43■■□□□ 1.18
CXCL12P48061 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms