Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.02■□□□□ 0.48
CDX1P47902 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.02■□□□□ 0.48
CDX1P47902 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX1P47902 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX1P47902 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.02■□□□□ 0.48
CDX1P47902 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX1P47902 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDX1P47902 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.02■□□□□ 0.48
CDX1P47902 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.02■□□□□ 0.48
CDX1P47902 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CDX1P47902 MTDHP2-201ENST00000601468 714 ntBASIC18.02■□□□□ 0.48
CDX1P47902 AC010997.5-201ENST00000609182 354 ntBASIC18.02■□□□□ 0.48
CDX1P47902 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.02■□□□□ 0.48
CDX1P47902 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.02■□□□□ 0.48
CDX1P47902 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CDX1P47902 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDX1P47902 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.02■□□□□ 0.47
CDX1P47902 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDX1P47902 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
CDX1P47902 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.01■□□□□ 0.47
CDX1P47902 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 AL137060.1-201ENST00000618151 2648 ntBASIC18.01■□□□□ 0.47
CDX1P47902 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CDX1P47902 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.01■□□□□ 0.47
CDX1P47902 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.01■□□□□ 0.47
CDX1P47902 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.01■□□□□ 0.47
CDX1P47902 MIR6089-201ENST00000616698 64 ntBASIC18.01■□□□□ 0.47
CDX1P47902 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.01■□□□□ 0.47
CDX1P47902 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
CDX1P47902 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX1P47902 LINC00526-201ENST00000581067 1875 ntBASIC18.01■□□□□ 0.47
CDX1P47902 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18■□□□□ 0.47
CDX1P47902 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18■□□□□ 0.47
CDX1P47902 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX1P47902 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CDX1P47902 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDX1P47902 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.99■□□□□ 0.47
CDX1P47902 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.99■□□□□ 0.47
CDX1P47902 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.99■□□□□ 0.47
CDX1P47902 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CDX1P47902 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX1P47902 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.98■□□□□ 0.47
CDX1P47902 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX1P47902 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX1P47902 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX1P47902 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC17.98■□□□□ 0.47
CDX1P47902 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.98■□□□□ 0.47
CDX1P47902 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX1P47902 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CDX1P47902 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CDX1P47902 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
CDX1P47902 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX1P47902 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.97■□□□□ 0.47
CDX1P47902 AP003733.4-201ENST00000623785 1697 ntBASIC17.97■□□□□ 0.47
CDX1P47902 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CDX1P47902 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
CDX1P47902 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 MIR6724-1-201ENST00000616420 92 ntBASIC17.97■□□□□ 0.47
CDX1P47902 MIR6724-2-201ENST00000616483 92 ntBASIC17.97■□□□□ 0.47
CDX1P47902 MIR6724-4-201ENST00000617390 92 ntBASIC17.97■□□□□ 0.47
CDX1P47902 MIR6724-3-201ENST00000622482 92 ntBASIC17.97■□□□□ 0.47
CDX1P47902 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CDX1P47902 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX1P47902 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX1P47902 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.97■□□□□ 0.47
CDX1P47902 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms