Protein–RNA interactions for Protein: P16410

CTLA4, Cytotoxic T-lymphocyte protein 4, humanhuman

Predictions only

Length 223 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTLA4P16410 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CTLA4P16410 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTLA4P16410 AC079834.2-201ENST00000609776 1949 ntBASIC19.81■□□□□ 0.76
CTLA4P16410 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTLA4P16410 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CTLA4P16410 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTLA4P16410 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTLA4P16410 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.81■□□□□ 0.76
CTLA4P16410 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTLA4P16410 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CTLA4P16410 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.8■□□□□ 0.76
CTLA4P16410 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CTLA4P16410 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTLA4P16410 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.79■□□□□ 0.76
CTLA4P16410 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
CTLA4P16410 TSPY9P-201ENST00000440215 945 ntBASIC19.79■□□□□ 0.76
CTLA4P16410 TSPY11P-201ENST00000442607 1045 ntBASIC19.79■□□□□ 0.76
CTLA4P16410 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.79■□□□□ 0.76
CTLA4P16410 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.79■□□□□ 0.76
CTLA4P16410 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CTLA4P16410 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CTLA4P16410 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTLA4P16410 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CTLA4P16410 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CTLA4P16410 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CTLA4P16410 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.78■□□□□ 0.76
CTLA4P16410 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.78■□□□□ 0.76
CTLA4P16410 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.78■□□□□ 0.76
CTLA4P16410 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CTLA4P16410 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CTLA4P16410 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CTLA4P16410 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.77■□□□□ 0.76
CTLA4P16410 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.77■□□□□ 0.76
CTLA4P16410 AC010997.5-201ENST00000609182 354 ntBASIC19.77■□□□□ 0.76
CTLA4P16410 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.77■□□□□ 0.76
CTLA4P16410 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.77■□□□□ 0.76
CTLA4P16410 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTLA4P16410 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CTLA4P16410 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.77■□□□□ 0.75
CTLA4P16410 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CTLA4P16410 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CTLA4P16410 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.76■□□□□ 0.75
CTLA4P16410 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.76■□□□□ 0.75
CTLA4P16410 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CTLA4P16410 LINC01529-204ENST00000636474 1715 ntBASIC19.76■□□□□ 0.75
CTLA4P16410 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.76■□□□□ 0.75
CTLA4P16410 GUSBP5-202ENST00000510805 1989 ntBASIC19.75■□□□□ 0.75
CTLA4P16410 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.75■□□□□ 0.75
CTLA4P16410 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.75■□□□□ 0.75
CTLA4P16410 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.75■□□□□ 0.75
CTLA4P16410 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 EP400NL-214ENST00000641289 2402 ntBASIC19.75■□□□□ 0.75
CTLA4P16410 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CTLA4P16410 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CTLA4P16410 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.74■□□□□ 0.75
CTLA4P16410 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CTLA4P16410 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CTLA4P16410 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.74■□□□□ 0.75
CTLA4P16410 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms