Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 ABCB10P4-201ENST00000566803 2184 ntBASIC27.16■■□□□ 1.94
COL1A1P02452 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC27.16■■□□□ 1.94
COL1A1P02452 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
COL1A1P02452 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
COL1A1P02452 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
COL1A1P02452 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC27.16■■□□□ 1.94
COL1A1P02452 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC27.15■■□□□ 1.94
COL1A1P02452 DUX4L4-201ENST00000566884 1269 ntBASIC27.15■■□□□ 1.94
COL1A1P02452 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC27.15■■□□□ 1.94
COL1A1P02452 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
COL1A1P02452 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
COL1A1P02452 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL1A1P02452 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
COL1A1P02452 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
COL1A1P02452 GRAMD4P2-201ENST00000423297 1097 ntBASIC27.14■■□□□ 1.94
COL1A1P02452 YBX1P1-201ENST00000445822 960 ntBASIC27.14■■□□□ 1.94
COL1A1P02452 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
COL1A1P02452 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.93
COL1A1P02452 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
COL1A1P02452 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.13■■□□□ 1.93
COL1A1P02452 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC27.13■■□□□ 1.93
COL1A1P02452 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL1A1P02452 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL1A1P02452 AC079630.1-202ENST00000618127 1840 ntBASIC27.13■■□□□ 1.93
COL1A1P02452 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.93
COL1A1P02452 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC27.13■■□□□ 1.93
COL1A1P02452 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
COL1A1P02452 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC27.13■■□□□ 1.93
COL1A1P02452 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC27.13■■□□□ 1.93
COL1A1P02452 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 H19-210ENST00000439725 1929 ntTSL 2 BASIC27.12■■□□□ 1.93
COL1A1P02452 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 OR2I1P-207ENST00000453522 948 ntBASIC27.12■■□□□ 1.93
COL1A1P02452 AC090192.1-201ENST00000517740 490 ntBASIC27.12■■□□□ 1.93
COL1A1P02452 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC27.12■■□□□ 1.93
COL1A1P02452 RARRES2P11-201ENST00000635158 484 ntBASIC27.12■■□□□ 1.93
COL1A1P02452 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
COL1A1P02452 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
COL1A1P02452 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL1A1P02452 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC27.11■■□□□ 1.93
COL1A1P02452 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL1A1P02452 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC27.11■■□□□ 1.93
COL1A1P02452 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL1A1P02452 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC27.11■■□□□ 1.93
COL1A1P02452 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
COL1A1P02452 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL1A1P02452 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC27.1■■□□□ 1.93
COL1A1P02452 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
COL1A1P02452 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC27.1■■□□□ 1.93
COL1A1P02452 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL1A1P02452 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC27.1■■□□□ 1.93
COL1A1P02452 HACD1-201ENST00000326961 773 ntTSL 2 BASIC27.1■■□□□ 1.93
COL1A1P02452 KRT18P5-201ENST00000436075 1291 ntBASIC27.1■■□□□ 1.93
COL1A1P02452 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
COL1A1P02452 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL1A1P02452 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
COL1A1P02452 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
COL1A1P02452 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
COL1A1P02452 TSPY26P-201ENST00000476365 1326 ntBASIC27.09■■□□□ 1.93
COL1A1P02452 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL1A1P02452 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
COL1A1P02452 AC027612.3-201ENST00000413684 1047 ntBASIC27.09■■□□□ 1.93
COL1A1P02452 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC27.09■■□□□ 1.93
COL1A1P02452 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC27.09■■□□□ 1.93
COL1A1P02452 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC27.09■■□□□ 1.93
COL1A1P02452 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC27.09■■□□□ 1.93
COL1A1P02452 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
COL1A1P02452 FP325331.1-202ENST00000623531 1380 ntBASIC27.08■■□□□ 1.93
COL1A1P02452 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL1A1P02452 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27.08■■□□□ 1.93
COL1A1P02452 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC27.08■■□□□ 1.93
COL1A1P02452 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.08■■□□□ 1.93
COL1A1P02452 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
COL1A1P02452 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
COL1A1P02452 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
COL1A1P02452 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL1A1P02452 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
COL1A1P02452 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL1A1P02452 IGHV3-19-201ENST00000521488 291 ntBASIC27.07■■□□□ 1.92
COL1A1P02452 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
COL1A1P02452 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC27.07■■□□□ 1.92
COL1A1P02452 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL1A1P02452 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC27.06■■□□□ 1.92
COL1A1P02452 AC126544.1-201ENST00000580842 1059 ntBASIC27.06■■□□□ 1.92
COL1A1P02452 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.06■■□□□ 1.92
COL1A1P02452 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 AL031602.1-201ENST00000633169 911 ntBASIC27.06■■□□□ 1.92
COL1A1P02452 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC27.06■■□□□ 1.92
COL1A1P02452 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL1A1P02452 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
COL1A1P02452 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms