Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.96■□□□□ 0.63
RAB3DO95716 AC139530.1-201ENST00000575312 1977 ntBASIC18.95■□□□□ 0.62
RAB3DO95716 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAB3DO95716 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RAB3DO95716 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RAB3DO95716 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RAB3DO95716 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.95■□□□□ 0.62
RAB3DO95716 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RAB3DO95716 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.95■□□□□ 0.62
RAB3DO95716 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RAB3DO95716 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.94■□□□□ 0.62
RAB3DO95716 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.94■□□□□ 0.62
RAB3DO95716 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.94■□□□□ 0.62
RAB3DO95716 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
RAB3DO95716 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RAB3DO95716 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.93■□□□□ 0.62
RAB3DO95716 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.93■□□□□ 0.62
RAB3DO95716 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
RAB3DO95716 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.93■□□□□ 0.62
RAB3DO95716 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RAB3DO95716 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.93■□□□□ 0.62
RAB3DO95716 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RAB3DO95716 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.93■□□□□ 0.62
RAB3DO95716 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.92■□□□□ 0.62
RAB3DO95716 FBXW4P1-201ENST00000426721 2239 ntBASIC18.92■□□□□ 0.62
RAB3DO95716 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.92■□□□□ 0.62
RAB3DO95716 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.92■□□□□ 0.62
RAB3DO95716 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
RAB3DO95716 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RAB3DO95716 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RAB3DO95716 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.92■□□□□ 0.62
RAB3DO95716 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.91■□□□□ 0.62
RAB3DO95716 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
RAB3DO95716 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
RAB3DO95716 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.91■□□□□ 0.62
RAB3DO95716 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.91■□□□□ 0.62
RAB3DO95716 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.91■□□□□ 0.62
RAB3DO95716 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
RAB3DO95716 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RAB3DO95716 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.9■□□□□ 0.62
RAB3DO95716 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RAB3DO95716 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.9■□□□□ 0.62
RAB3DO95716 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
RAB3DO95716 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RAB3DO95716 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
RAB3DO95716 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RAB3DO95716 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.9■□□□□ 0.62
RAB3DO95716 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
RAB3DO95716 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
RAB3DO95716 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.62
RAB3DO95716 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.89■□□□□ 0.61
RAB3DO95716 AL592295.1-201ENST00000400984 884 ntBASIC18.89■□□□□ 0.61
RAB3DO95716 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.89■□□□□ 0.61
RAB3DO95716 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 AC022413.1-201ENST00000624602 984 ntBASIC18.89■□□□□ 0.61
RAB3DO95716 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
RAB3DO95716 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RAB3DO95716 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RAB3DO95716 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 1189.3 ms