Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21■□□□□ 0.95
LDB3O75112 FP325331.1-202ENST00000623531 1380 ntBASIC21■□□□□ 0.95
LDB3O75112 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LDB3O75112 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21■□□□□ 0.95
LDB3O75112 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21■□□□□ 0.95
LDB3O75112 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21■□□□□ 0.95
LDB3O75112 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LDB3O75112 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.99■□□□□ 0.95
LDB3O75112 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.99■□□□□ 0.95
LDB3O75112 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LDB3O75112 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.99■□□□□ 0.95
LDB3O75112 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LDB3O75112 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.99■□□□□ 0.95
LDB3O75112 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LDB3O75112 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 AC006455.2-201ENST00000429931 906 ntBASIC20.98■□□□□ 0.95
LDB3O75112 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 AC009086.3-201ENST00000623486 1008 ntBASIC20.98■□□□□ 0.95
LDB3O75112 AC241377.3-202ENST00000626088 1088 ntBASIC20.98■□□□□ 0.95
LDB3O75112 AC241585.3-202ENST00000628937 1088 ntBASIC20.98■□□□□ 0.95
LDB3O75112 AC245100.8-202ENST00000629247 1058 ntBASIC20.98■□□□□ 0.95
LDB3O75112 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LDB3O75112 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
LDB3O75112 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LDB3O75112 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.98■□□□□ 0.95
LDB3O75112 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.98■□□□□ 0.95
LDB3O75112 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LDB3O75112 DUSP8P3-201ENST00000399571 1760 ntBASIC20.97■□□□□ 0.95
LDB3O75112 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDB3O75112 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.97■□□□□ 0.95
LDB3O75112 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.97■□□□□ 0.95
LDB3O75112 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDB3O75112 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
LDB3O75112 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LDB3O75112 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDB3O75112 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.97■□□□□ 0.95
LDB3O75112 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
LDB3O75112 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LDB3O75112 C9orf163-202ENST00000624034 2573 ntBASIC20.96■□□□□ 0.95
LDB3O75112 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.96■□□□□ 0.95
LDB3O75112 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.96■□□□□ 0.95
LDB3O75112 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.96■□□□□ 0.95
LDB3O75112 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LDB3O75112 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.96■□□□□ 0.95
LDB3O75112 DUX4L4-201ENST00000566884 1269 ntBASIC20.96■□□□□ 0.95
LDB3O75112 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.96■□□□□ 0.95
LDB3O75112 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LDB3O75112 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.96■□□□□ 0.95
LDB3O75112 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.95■□□□□ 0.94
LDB3O75112 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
LDB3O75112 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LDB3O75112 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDB3O75112 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDB3O75112 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.95■□□□□ 0.94
LDB3O75112 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDB3O75112 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
LDB3O75112 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.95■□□□□ 0.94
LDB3O75112 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.94■□□□□ 0.94
LDB3O75112 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDB3O75112 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.93■□□□□ 0.94
LDB3O75112 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.93■□□□□ 0.94
LDB3O75112 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.93■□□□□ 0.94
LDB3O75112 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
LDB3O75112 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.93■□□□□ 0.94
LDB3O75112 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LDB3O75112 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.93■□□□□ 0.94
LDB3O75112 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.93■□□□□ 0.94
LDB3O75112 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LDB3O75112 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.93■□□□□ 0.94
LDB3O75112 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDB3O75112 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDB3O75112 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms