Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
CACNA1FO60840 MIR4767-201ENST00000582827 78 ntBASIC28.4■■■□□ 2.14
CACNA1FO60840 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
CACNA1FO60840 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.39■■■□□ 2.14
CACNA1FO60840 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.39■■■□□ 2.14
CACNA1FO60840 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CACNA1FO60840 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
CACNA1FO60840 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
CACNA1FO60840 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.39■■■□□ 2.13
CACNA1FO60840 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.39■■■□□ 2.13
CACNA1FO60840 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
CACNA1FO60840 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC28.39■■■□□ 2.13
CACNA1FO60840 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC28.39■■■□□ 2.13
CACNA1FO60840 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
CACNA1FO60840 MIR939-201ENST00000401314 82 ntBASIC28.38■■■□□ 2.13
CACNA1FO60840 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.38■■■□□ 2.13
CACNA1FO60840 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CACNA1FO60840 OR2I1P-207ENST00000453522 948 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 AF213884.3-201ENST00000563833 479 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 AC010525.1-201ENST00000585559 441 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC28.37■■■□□ 2.13
CACNA1FO60840 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CACNA1FO60840 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CACNA1FO60840 THRA-202ENST00000394121 2260 ntTSL 2 BASIC28.37■■■□□ 2.13
CACNA1FO60840 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CACNA1FO60840 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
CACNA1FO60840 pRNA.6-201ENST00000610482 90 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 pRNA.5-201ENST00000612139 90 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 pRNA.11-201ENST00000618423 90 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 pRNA.13-201ENST00000619112 90 ntBASIC28.37■■■□□ 2.13
CACNA1FO60840 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
CACNA1FO60840 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
CACNA1FO60840 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.36■■■□□ 2.13
CACNA1FO60840 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC28.36■■■□□ 2.13
CACNA1FO60840 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.36■■■□□ 2.13
CACNA1FO60840 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.36■■■□□ 2.13
CACNA1FO60840 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.36■■■□□ 2.13
CACNA1FO60840 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1FO60840 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CACNA1FO60840 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CACNA1FO60840 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CACNA1FO60840 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CACNA1FO60840 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CACNA1FO60840 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC28.35■■■□□ 2.13
CACNA1FO60840 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CACNA1FO60840 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC28.35■■■□□ 2.13
CACNA1FO60840 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CACNA1FO60840 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
CACNA1FO60840 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CACNA1FO60840 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CACNA1FO60840 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
CACNA1FO60840 BX842568.3-201ENST00000418104 571 ntBASIC28.34■■■□□ 2.13
CACNA1FO60840 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.34■■■□□ 2.13
CACNA1FO60840 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.34■■■□□ 2.13
CACNA1FO60840 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CACNA1FO60840 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.33■■■□□ 2.13
CACNA1FO60840 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.33■■■□□ 2.13
CACNA1FO60840 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
CACNA1FO60840 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CACNA1FO60840 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 AC027682.1-201ENST00000562846 899 ntBASIC28.32■■■□□ 2.12
CACNA1FO60840 RASA4CP-201ENST00000424092 1398 ntBASIC28.32■■■□□ 2.12
CACNA1FO60840 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC28.32■■■□□ 2.12
CACNA1FO60840 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CACNA1FO60840 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
CACNA1FO60840 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
CACNA1FO60840 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CACNA1FO60840 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CACNA1FO60840 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CACNA1FO60840 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CACNA1FO60840 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.31■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms