Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.72■■□□□ 1.07
UBFD1O14562 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.72■■□□□ 1.07
UBFD1O14562 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.72■■□□□ 1.07
UBFD1O14562 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
UBFD1O14562 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 AC242852.2-201ENST00000615738 1807 ntBASIC21.71■■□□□ 1.07
UBFD1O14562 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
UBFD1O14562 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.71■■□□□ 1.07
UBFD1O14562 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
UBFD1O14562 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.71■■□□□ 1.07
UBFD1O14562 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
UBFD1O14562 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
UBFD1O14562 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
UBFD1O14562 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
UBFD1O14562 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.7■■□□□ 1.06
UBFD1O14562 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.7■■□□□ 1.06
UBFD1O14562 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
UBFD1O14562 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
UBFD1O14562 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBFD1O14562 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.69■■□□□ 1.06
UBFD1O14562 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.69■■□□□ 1.06
UBFD1O14562 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBFD1O14562 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBFD1O14562 AC127496.7-201ENST00000625110 1798 ntBASIC21.69■■□□□ 1.06
UBFD1O14562 AC137630.3-201ENST00000607245 391 ntBASIC21.69■■□□□ 1.06
UBFD1O14562 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
UBFD1O14562 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
UBFD1O14562 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
UBFD1O14562 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.69■■□□□ 1.06
UBFD1O14562 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
UBFD1O14562 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.68■■□□□ 1.06
UBFD1O14562 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
UBFD1O14562 AC144652.1-201ENST00000609974 1624 ntBASIC21.68■■□□□ 1.06
UBFD1O14562 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.68■■□□□ 1.06
UBFD1O14562 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.68■■□□□ 1.06
UBFD1O14562 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
UBFD1O14562 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBFD1O14562 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
UBFD1O14562 YBX1P4-201ENST00000392794 808 ntBASIC21.67■■□□□ 1.06
UBFD1O14562 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
UBFD1O14562 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.67■■□□□ 1.06
UBFD1O14562 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.67■■□□□ 1.06
UBFD1O14562 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
UBFD1O14562 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
UBFD1O14562 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBFD1O14562 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBFD1O14562 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UBFD1O14562 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
UBFD1O14562 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
UBFD1O14562 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBFD1O14562 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBFD1O14562 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.66■■□□□ 1.06
UBFD1O14562 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.66■■□□□ 1.06
UBFD1O14562 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBFD1O14562 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UBFD1O14562 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.66■■□□□ 1.06
UBFD1O14562 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.66■■□□□ 1.06
UBFD1O14562 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
UBFD1O14562 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.66■■□□□ 1.06
UBFD1O14562 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UBFD1O14562 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
UBFD1O14562 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.65■■□□□ 1.06
UBFD1O14562 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
UBFD1O14562 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
UBFD1O14562 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms