Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SDCBPO00560 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SDCBPO00560 KRT8P33-201ENST00000508125 1423 ntBASIC18.91■□□□□ 0.62
SDCBPO00560 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SDCBPO00560 AC127496.7-201ENST00000625110 1798 ntBASIC18.91■□□□□ 0.62
SDCBPO00560 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.91■□□□□ 0.62
SDCBPO00560 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SDCBPO00560 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SDCBPO00560 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.91■□□□□ 0.62
SDCBPO00560 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.91■□□□□ 0.62
SDCBPO00560 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.91■□□□□ 0.62
SDCBPO00560 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDCBPO00560 MIR4281-201ENST00000580852 62 ntBASIC18.91■□□□□ 0.62
SDCBPO00560 MIR4508-201ENST00000584178 70 ntBASIC18.91■□□□□ 0.62
SDCBPO00560 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SDCBPO00560 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SDCBPO00560 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.9■□□□□ 0.62
SDCBPO00560 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SDCBPO00560 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.9■□□□□ 0.62
SDCBPO00560 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SDCBPO00560 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.9■□□□□ 0.62
SDCBPO00560 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SDCBPO00560 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.9■□□□□ 0.62
SDCBPO00560 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SDCBPO00560 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.9■□□□□ 0.62
SDCBPO00560 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SDCBPO00560 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.89■□□□□ 0.61
SDCBPO00560 ALDH1A3-203ENST00000557963 1670 ntBASIC18.89■□□□□ 0.61
SDCBPO00560 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDCBPO00560 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.89■□□□□ 0.61
SDCBPO00560 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SDCBPO00560 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDCBPO00560 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SDCBPO00560 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SDCBPO00560 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
SDCBPO00560 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDCBPO00560 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDCBPO00560 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.88■□□□□ 0.61
SDCBPO00560 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.88■□□□□ 0.61
SDCBPO00560 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.88■□□□□ 0.61
SDCBPO00560 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDCBPO00560 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SDCBPO00560 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDCBPO00560 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SDCBPO00560 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.87■□□□□ 0.61
SDCBPO00560 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SDCBPO00560 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SDCBPO00560 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SDCBPO00560 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.87■□□□□ 0.61
SDCBPO00560 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.87■□□□□ 0.61
SDCBPO00560 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 AC131274.2-201ENST00000580697 1507 ntBASIC18.87■□□□□ 0.61
SDCBPO00560 AC007375.3-201ENST00000600936 2314 ntBASIC18.87■□□□□ 0.61
SDCBPO00560 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.87■□□□□ 0.61
SDCBPO00560 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDCBPO00560 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 AC137767.1-201ENST00000602918 1920 ntBASIC18.86■□□□□ 0.61
SDCBPO00560 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SDCBPO00560 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.86■□□□□ 0.61
SDCBPO00560 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 AC103834.1-201ENST00000520383 144 ntBASIC18.86■□□□□ 0.61
SDCBPO00560 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
SDCBPO00560 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.86■□□□□ 0.61
SDCBPO00560 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDCBPO00560 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.85■□□□□ 0.61
SDCBPO00560 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.85■□□□□ 0.61
SDCBPO00560 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SDCBPO00560 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SDCBPO00560 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SDCBPO00560 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SDCBPO00560 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDCBPO00560 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDCBPO00560 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.85■□□□□ 0.61
SDCBPO00560 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDCBPO00560 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SDCBPO00560 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms