Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV41A0A0B4J266 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 SYT6-210ENST00000641643 1587 ntBASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV41A0A0B4J266 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 AC006455.2-201ENST00000429931 906 ntBASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRAV41A0A0B4J266 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV41A0A0B4J266 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.52■□□□□ 0.39
TRAV41A0A0B4J266 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV41A0A0B4J266 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV41A0A0B4J266 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.52■□□□□ 0.39
TRAV41A0A0B4J266 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV41A0A0B4J266 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 pRNA.6-201ENST00000610482 90 ntBASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 pRNA.5-201ENST00000612139 90 ntBASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 pRNA.11-201ENST00000618423 90 ntBASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 pRNA.13-201ENST00000619112 90 ntBASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.5■□□□□ 0.39
TRAV41A0A0B4J266 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV41A0A0B4J266 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV41A0A0B4J266 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV41A0A0B4J266 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV41A0A0B4J266 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV41A0A0B4J266 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms