Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PTN-202ENST00000393083 1599 ntTSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 CFL1P6-201ENST00000400899 494 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AC006529.1-201ENST00000459978 637 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 RPL18AP3-201ENST00000462885 528 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AL031713.1-201ENST00000564813 661 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AP000322.3-201ENST00000608665 388 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 FO393412.1-201ENST00000619841 382 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 ST20-AS1-201ENST00000560255 4223 ntBASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SHROOM3Q8TF72 AP000437.1-201ENST00000624057 2085 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 CICP9-201ENST00000444451 1913 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 COL6A4P2-202ENST00000504443 2753 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 KRT8P42-201ENST00000405771 1399 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 DKKL1P1-201ENST00000400550 698 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 GULOP-201ENST00000454030 748 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 AC025186.1-201ENST00000478174 870 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 AL118516.1-201ENST00000564152 670 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 AC011247.3-201ENST00000603297 438 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 CICP20-201ENST00000443330 2801 ntBASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
SHROOM3Q8TF72 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 ACTBP14-201ENST00000411655 1089 ntBASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 GUSBP10-201ENST00000417412 665 ntBASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.96□□□□□ -0.17
SHROOM3Q8TF72 RPS23-207ENST00000511844 530 ntTSL 2 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms