Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SL371P-201ENST00000578099 267 ntBASIC14.63□□□□□ -0.07
LIG3P49916 AL645939.5-201ENST00000606834 243 ntBASIC14.63□□□□□ -0.07
LIG3P49916 AC026740.1-201ENST00000607068 791 ntBASIC14.63□□□□□ -0.07
LIG3P49916 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.63□□□□□ -0.07
LIG3P49916 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 TUBBP5-203ENST00000508529 1334 ntBASIC14.63□□□□□ -0.07
LIG3P49916 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC14.62□□□□□ -0.07
LIG3P49916 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC14.62□□□□□ -0.07
LIG3P49916 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 AC006122.1-201ENST00000493323 440 ntBASIC14.62□□□□□ -0.07
LIG3P49916 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.62□□□□□ -0.07
LIG3P49916 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.62□□□□□ -0.07
LIG3P49916 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIG3P49916 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
LIG3P49916 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
LIG3P49916 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
LIG3P49916 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
LIG3P49916 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LIG3P49916 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 CYP4F23P-201ENST00000593402 1579 ntBASIC14.61□□□□□ -0.07
LIG3P49916 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC14.61□□□□□ -0.07
LIG3P49916 AL445250.1-201ENST00000641671 2259 ntBASIC14.61□□□□□ -0.07
LIG3P49916 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIG3P49916 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 AC010536.1-201ENST00000538868 2611 ntBASIC14.61□□□□□ -0.07
LIG3P49916 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
LIG3P49916 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 CYP46A4P-201ENST00000414953 267 ntBASIC14.61□□□□□ -0.07
LIG3P49916 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC14.61□□□□□ -0.07
LIG3P49916 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.61□□□□□ -0.07
LIG3P49916 AC125604.1-201ENST00000496255 707 ntBASIC14.61□□□□□ -0.07
LIG3P49916 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.61□□□□□ -0.07
LIG3P49916 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.61□□□□□ -0.07
LIG3P49916 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.61□□□□□ -0.07
LIG3P49916 AC009779.1-201ENST00000551138 283 ntBASIC14.61□□□□□ -0.07
LIG3P49916 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms