Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AL590240.2-201ENST00000413370 894 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 AL592076.1-201ENST00000424448 303 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 TPT1P11-201ENST00000458482 498 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC110760.3-202ENST00000515177 371 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 MIR4754-201ENST00000582477 89 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC084346.2-201ENST00000607097 949 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC097724.1-201ENST00000609581 426 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 FP565260.4-201ENST00000624081 513 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC010976.1-201ENST00000631170 734 ntTSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC145098.2-201ENST00000623593 3026 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
USB1Q9BQ65 BEND3P3-201ENST00000611030 2440 ntBASIC12.66□□□□□ -0.38
USB1Q9BQ65 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
USB1Q9BQ65 LAP3P2-201ENST00000454686 1454 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AL359881.3-201ENST00000602640 1721 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 KRT18P9-201ENST00000604826 1300 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AGGF1P1-201ENST00000509500 2073 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 MRPL47-202ENST00000392659 673 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ACTG1P2-201ENST00000415776 1125 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 ACTG1P11-201ENST00000425411 1125 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC234782.1-201ENST00000451950 919 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 CHMP4BP1-201ENST00000556017 588 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC242376.1-201ENST00000559033 726 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 NAT9-220ENST00000582870 896 ntTSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 AC079336.7-201ENST00000623428 1078 ntBASIC12.65□□□□□ -0.38
USB1Q9BQ65 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USB1Q9BQ65 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.65□□□□□ -0.38
USB1Q9BQ65 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms