Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 PTAR1-201ENST00000340434 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 APH1B-203ENST00000380343 685 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 SMIM21-201ENST00000382638 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 VN1R64P-201ENST00000424940 933 ntBASIC13.64□□□□□ -0.23
COL6A3P12111 AL031432.1-201ENST00000455902 988 ntTSL 3 BASIC13.64□□□□□ -0.23
COL6A3P12111 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC13.64□□□□□ -0.23
COL6A3P12111 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 CIPC-206ENST00000555611 599 ntTSL 4 BASIC13.64□□□□□ -0.23
COL6A3P12111 MIR3689A-201ENST00000578854 78 ntBASIC13.64□□□□□ -0.23
COL6A3P12111 AFMID-210ENST00000589256 578 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
COL6A3P12111 AC107375.1-201ENST00000564464 2231 ntBASIC13.64□□□□□ -0.23
COL6A3P12111 LINC00638-201ENST00000555578 2518 ntBASIC13.64□□□□□ -0.23
COL6A3P12111 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.64□□□□□ -0.23
COL6A3P12111 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL6A3P12111 APTX-215ENST00000468275 1455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 AC144831.1-201ENST00000573312 2656 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 PRPS1-201ENST00000372418 942 ntTSL 3 BASIC13.63□□□□□ -0.23
COL6A3P12111 RPL3P7-201ENST00000417878 1212 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 AC004231.1-201ENST00000418393 815 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 TSPAN16-206ENST00000621731 642 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 LINC02381-202ENST00000635070 1341 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 CNMD-201ENST00000377962 1410 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.63□□□□□ -0.23
COL6A3P12111 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 AC046158.3-201ENST00000624947 2558 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 OR7E33P-201ENST00000437705 966 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 RN7SL454P-201ENST00000492744 243 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 WISP1-204ENST00000517423 716 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.63□□□□□ -0.23
COL6A3P12111 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 VOPP1-206ENST00000428097 1671 ntTSL 3 BASIC13.63□□□□□ -0.23
COL6A3P12111 TSGA10-201ENST00000355053 3037 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 TRPM8-202ENST00000355722 904 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 COQ4-202ENST00000372875 928 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 AL357054.1-201ENST00000407035 1227 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 AL031575.1-201ENST00000416609 845 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 AC005730.1-201ENST00000434406 344 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 PROCA1-204ENST00000439862 1137 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL6A3P12111 LINC02182-201ENST00000569362 498 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A3P12111 AC010271.2-201ENST00000614440 588 ntBASIC13.63□□□□□ -0.23
COL6A3P12111 AC092809.4-201ENST00000420350 1323 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A3P12111 ABCD1P2-201ENST00000429313 1601 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 SPATA22-204ENST00000541913 1683 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A3P12111 ZP4-201ENST00000366570 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 AL590552.1-201ENST00000623164 1770 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A3P12111 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A3P12111 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A3P12111 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL6A3P12111 HLA-DRB6-202ENST00000437183 1090 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 AC091849.2-201ENST00000503113 692 ntTSL 3 BASIC13.62□□□□□ -0.23
COL6A3P12111 CNDP2-228ENST00000584768 897 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 AC010976.1-201ENST00000631170 734 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A3P12111 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A3P12111 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 MTFR1L-210ENST00000474295 1873 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms