Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 CICP8-201ENST00000455800 2813 ntBASIC16.27■□□□□ 0.2
HMGB1P09429 DDC-212ENST00000615193 1674 ntTSL 3 BASIC16.27■□□□□ 0.2
HMGB1P09429 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HMGB1P09429 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HMGB1P09429 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 CEP164P1-201ENST00000455142 418 ntBASIC16.27■□□□□ 0.2
HMGB1P09429 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 RN7SL81P-201ENST00000493781 261 ntBASIC16.27■□□□□ 0.2
HMGB1P09429 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGB1P09429 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.27■□□□□ 0.2
HMGB1P09429 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.27■□□□□ 0.2
HMGB1P09429 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGB1P09429 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGB1P09429 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGB1P09429 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGB1P09429 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB1P09429 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB1P09429 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC16.27■□□□□ 0.19
HMGB1P09429 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 LSINCT5-201ENST00000626215 2647 ntBASIC16.27■□□□□ 0.19
HMGB1P09429 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB1P09429 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGB1P09429 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGB1P09429 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.26■□□□□ 0.19
HMGB1P09429 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HMGB1P09429 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC16.26■□□□□ 0.19
HMGB1P09429 RN7SL720P-201ENST00000488178 304 ntBASIC16.26■□□□□ 0.19
HMGB1P09429 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
HMGB1P09429 OR5BD1P-201ENST00000532527 817 ntBASIC16.26■□□□□ 0.19
HMGB1P09429 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
HMGB1P09429 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.26■□□□□ 0.19
HMGB1P09429 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.26■□□□□ 0.19
HMGB1P09429 AC097724.1-201ENST00000609581 426 ntBASIC16.26■□□□□ 0.19
HMGB1P09429 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 AC079781.5-202ENST00000641784 3743 ntBASIC16.26■□□□□ 0.19
HMGB1P09429 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 OS9-218ENST00000551035 2246 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HMGB1P09429 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC16.26■□□□□ 0.19
HMGB1P09429 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HMGB1P09429 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HMGB1P09429 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms