Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 HNRNPF-202ENST00000356053 2670 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 HNRNPF-207ENST00000544000 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC10.72□□□□□ -0.69
CXCL1P09341 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC10.72□□□□□ -0.69
CXCL1P09341 AC020763.3-201ENST00000625095 2904 ntBASIC10.72□□□□□ -0.69
CXCL1P09341 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 CCAR2-206ENST00000520861 3560 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
CXCL1P09341 C12orf56-201ENST00000333722 3936 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 CCT8-201ENST00000286788 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 RABL2B-201ENST00000354869 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 ZNF44-202ENST00000355684 2119 ntAPPRIS P3 TSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 PRKAG2-202ENST00000392801 2281 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CXCL1P09341 CDKL2-201ENST00000307465 2565 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
CXCL1P09341 PEX12-201ENST00000225873 2675 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 NLRP2-209ENST00000537859 3507 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 TRAF5-203ENST00000367004 1827 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 MTRF1L-203ENST00000367233 3676 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
CXCL1P09341 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 SLC25A25-203ENST00000373068 3431 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 NMT2-202ENST00000378165 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 SUOX-203ENST00000394109 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 PHF21B-202ENST00000396103 3540 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC10.71□□□□□ -0.69
CXCL1P09341 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 PTPA-215ENST00000432124 567 ntTSL 4 BASIC10.71□□□□□ -0.69
CXCL1P09341 CD36-207ENST00000432207 1808 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 AL449403.1-201ENST00000432783 1577 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 AC245100.3-201ENST00000441281 285 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC10.71□□□□□ -0.69
CXCL1P09341 CICP9-201ENST00000444451 1913 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 FAM86GP-201ENST00000448322 971 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
CXCL1P09341 AC055876.2-201ENST00000531834 546 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 STOM-203ENST00000538954 1257 ntTSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 AC023310.3-201ENST00000557027 670 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC104590.1-202ENST00000558368 1921 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC100756.1-201ENST00000562736 682 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC138749.3-201ENST00000567691 622 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC10.71□□□□□ -0.69
CXCL1P09341 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC10.71□□□□□ -0.69
CXCL1P09341 AC022144.1-201ENST00000602255 1580 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC008738.7-201ENST00000609744 511 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC116165.1-201ENST00000611806 668 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 TMEM185A-210ENST00000613273 1913 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CXCL1P09341 TBC1D3F-201ENST00000620210 2117 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
CXCL1P09341 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC10.71□□□□□ -0.69
CXCL1P09341 ABBA01031660.1-201ENST00000635219 756 ntBASIC10.71□□□□□ -0.69
CXCL1P09341 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC10.71□□□□□ -0.69
CXCL1P09341 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 LINC01122-207ENST00000452840 4077 ntTSL 5 BASIC10.71□□□□□ -0.7
CXCL1P09341 ELN-205ENST00000358929 3967 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
CXCL1P09341 ATP13A2-201ENST00000326735 3840 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 AC093525.7-201ENST00000569852 3626 ntBASIC10.71□□□□□ -0.7
CXCL1P09341 PITX2-202ENST00000354925 3359 ntAPPRIS ALT1 TSL 2 BASIC10.71□□□□□ -0.7
CXCL1P09341 SARDH-207ENST00000439388 3216 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.7
CXCL1P09341 AGO2-205ENST00000519980 3141 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 AGAP3-226ENST00000622464 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 EZR-203ENST00000392177 2933 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.7
CXCL1P09341 SCML1-204ENST00000398080 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 TK2-206ENST00000527800 2687 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
CXCL1P09341 ABCF2-201ENST00000222388 2185 ntTSL 5 BASIC10.7□□□□□ -0.7
CXCL1P09341 DGKH-202ENST00000337343 4246 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
CXCL1P09341 SEC24B-203ENST00000504968 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
CXCL1P09341 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC10.7□□□□□ -0.7
CXCL1P09341 MRO-203ENST00000428869 1966 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
CXCL1P09341 INTS6L-206ENST00000639893 3904 ntTSL 5 BASIC10.7□□□□□ -0.7
CXCL1P09341 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
CXCL1P09341 MFAP4-201ENST00000299610 1873 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms