Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CELP-201ENST00000411440 1249 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 RN7SL181P-201ENST00000462921 277 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AP000911.2-201ENST00000534330 502 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 KRT8P2-201ENST00000556193 944 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 RPL17P45-201ENST00000586289 509 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 COX6A1P2-201ENST00000620597 330 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 AC130686.1-201ENST00000622936 2466 ntBASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
TRIM39Q9HCM9 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MIR193BHG-211ENST00000641433 5365 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 OR2W2P-201ENST00000406313 909 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 HIST2H2BA-201ENST00000412169 381 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 HINT1-205ENST00000508488 703 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MIR3147-201ENST00000577811 66 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 NUDT4P2-201ENST00000578341 546 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MIR3180-2-201ENST00000581748 88 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 RN7SL190P-201ENST00000582519 257 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AL049840.2-201ENST00000602722 535 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 MIR6842-201ENST00000612539 65 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AC023794.5-201ENST00000564380 2157 ntBASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.76□□□□□ -0.21
TRIM39Q9HCM9 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms