Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 KRT18P62-201ENST00000446618 1287 ntBASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC093300.1-201ENST00000510368 1201 ntBASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 HMGB1P24-201ENST00000611897 328 ntBASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 ETV2-207ENST00000619399 994 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC3Q9BQI4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 AC090643.2-201ENST00000623442 2029 ntBASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC3Q9BQI4 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 OR2W2P-201ENST00000406313 909 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC025186.1-201ENST00000478174 870 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC090136.2-201ENST00000517809 420 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 MT2A-202ENST00000561491 581 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 USB1-205ENST00000561743 1135 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AC010632.2-201ENST00000588369 1224 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 RNF146-211ENST00000609447 607 ntTSL 4 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AL031673.1-201ENST00000611460 466 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 AL365181.1-201ENST00000564032 1828 ntBASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms