Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 TBC1D27-202ENST00000424239 1573 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 HIST2H2BA-201ENST00000412169 381 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AL354861.1-201ENST00000445213 355 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 RN7SL788P-201ENST00000460504 316 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 RPL18AP3-201ENST00000462885 528 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 RNA5SP417-201ENST00000516459 108 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AL359091.4-201ENST00000610052 409 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AC005618.3-201ENST00000624928 458 ntBASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
TRIM48Q8IWZ4 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RPSAP31-201ENST00000416648 895 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RPS23-204ENST00000507980 836 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AC095040.1-201ENST00000513286 675 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 NPM1P43-201ENST00000558669 786 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RPL17P45-201ENST00000586289 509 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RN7SL736P-201ENST00000613111 269 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AC073911.3-201ENST00000624401 631 ntBASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TRIM48Q8IWZ4 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms