Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 RPS23-207ENST00000511844 530 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC003686.1-201ENST00000550956 1034 ntBASIC13.38□□□□□ -0.27
COL28A1Q2UY09 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 MT2A-202ENST00000561491 581 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL28A1Q2UY09 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 FKBP4P8-201ENST00000610931 1369 ntBASIC13.37□□□□□ -0.27
COL28A1Q2UY09 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 GGTLC4P-201ENST00000402176 664 ntBASIC13.37□□□□□ -0.27
COL28A1Q2UY09 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AC090820.1-201ENST00000519722 591 ntBASIC13.37□□□□□ -0.27
COL28A1Q2UY09 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 MIR6074-201ENST00000612054 107 ntBASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL28A1Q2UY09 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL28A1Q2UY09 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 215.5 ms