Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC100827.2-201ENST00000563214 1194 ntBASIC15.6■□□□□ 0.09
TPM4P67936 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.6■□□□□ 0.09
TPM4P67936 AC233724.13-201ENST00000598383 410 ntBASIC15.6■□□□□ 0.09
TPM4P67936 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 AL139424.3-202ENST00000641619 917 ntBASIC15.6■□□□□ 0.09
TPM4P67936 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TPM4P67936 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 AC093462.1-201ENST00000621167 1683 ntBASIC15.6■□□□□ 0.09
TPM4P67936 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 FAHD2A-201ENST00000233379 4757 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 AR-208ENST00000612452 10676 ntTSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 MIR770-201ENST00000390219 98 ntBASIC15.59■□□□□ 0.09
TPM4P67936 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.59■□□□□ 0.09
TPM4P67936 AC092580.1-201ENST00000433998 658 ntBASIC15.59■□□□□ 0.09
TPM4P67936 POM121L10P-201ENST00000436994 1285 ntBASIC15.59■□□□□ 0.09
TPM4P67936 AC007551.1-201ENST00000457394 519 ntBASIC15.59■□□□□ 0.09
TPM4P67936 AC006122.1-201ENST00000493323 440 ntBASIC15.59■□□□□ 0.09
TPM4P67936 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.59■□□□□ 0.09
TPM4P67936 AL356740.1-201ENST00000602192 1297 ntBASIC15.59■□□□□ 0.09
TPM4P67936 AC244669.2-201ENST00000612320 853 ntBASIC15.59■□□□□ 0.09
TPM4P67936 Z98259.2-201ENST00000641583 609 ntBASIC15.59■□□□□ 0.09
TPM4P67936 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC15.59■□□□□ 0.09
TPM4P67936 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC15.59■□□□□ 0.09
TPM4P67936 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.59■□□□□ 0.09
TPM4P67936 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
TPM4P67936 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.59■□□□□ 0.09
TPM4P67936 STARD13-202ENST00000336934 5917 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TPM4P67936 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC15.59■□□□□ 0.09
TPM4P67936 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC15.59■□□□□ 0.09
TPM4P67936 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TPM4P67936 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TPM4P67936 GOLGA2P5-201ENST00000266746 2395 ntBASIC15.58■□□□□ 0.09
TPM4P67936 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
TPM4P67936 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
TPM4P67936 MAP3K9-205ENST00000554752 11169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TPM4P67936 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TPM4P67936 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TPM4P67936 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 CNN2P10-201ENST00000443067 918 ntBASIC15.58■□□□□ 0.08
TPM4P67936 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.58■□□□□ 0.08
TPM4P67936 RN7SL204P-201ENST00000582831 262 ntBASIC15.58■□□□□ 0.08
TPM4P67936 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TPM4P67936 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms