Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A2P12110 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 SSR4P1-201ENST00000415143 412 ntBASIC13.71□□□□□ -0.21
COL6A2P12110 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 DUX4L50-201ENST00000455245 715 ntBASIC13.71□□□□□ -0.21
COL6A2P12110 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A2P12110 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A2P12110 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 FAM8A2P-201ENST00000528813 1142 ntBASIC13.71□□□□□ -0.21
COL6A2P12110 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 AC013355.1-201ENST00000562625 723 ntBASIC13.71□□□□□ -0.21
COL6A2P12110 NDUFB10P1-201ENST00000567319 521 ntBASIC13.71□□□□□ -0.21
COL6A2P12110 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.71□□□□□ -0.21
COL6A2P12110 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A2P12110 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC13.71□□□□□ -0.21
COL6A2P12110 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A2P12110 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A2P12110 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A2P12110 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A2P12110 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A2P12110 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A2P12110 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 HSPA8P9-201ENST00000485881 1943 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL6A2P12110 AC022364.1-202ENST00000617468 2409 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A2P12110 AC040160.2-201ENST00000623816 1675 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC13.7□□□□□ -0.22
COL6A2P12110 KRT8P21-201ENST00000430398 1491 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 KRT223P-202ENST00000449164 1292 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 AC022210.1-201ENST00000449856 793 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 AL591846.1-201ENST00000451736 433 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A2P12110 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL6A2P12110 SERPINA13P-202ENST00000478994 924 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A2P12110 AC119751.2-201ENST00000504529 210 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A2P12110 AC005740.2-201ENST00000511085 419 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.7□□□□□ -0.22
COL6A2P12110 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 AC104982.3-201ENST00000581995 514 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 AL021707.6-201ENST00000609212 491 ntBASIC13.7□□□□□ -0.22
COL6A2P12110 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
COL6A2P12110 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.7□□□□□ -0.22
COL6A2P12110 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A2P12110 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A2P12110 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A2P12110 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.69□□□□□ -0.22
COL6A2P12110 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A2P12110 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A2P12110 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms