Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 AC131212.3-201ENST00000624087 4219 ntBASIC14.61□□□□□ -0.07
BDNFP23560 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 AF013593.1-201ENST00000458074 1487 ntBASIC14.61□□□□□ -0.07
BDNFP23560 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
BDNFP23560 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 AC010327.5-201ENST00000586923 3061 ntBASIC14.61□□□□□ -0.07
BDNFP23560 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.61□□□□□ -0.07
BDNFP23560 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BDNFP23560 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
BDNFP23560 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
BDNFP23560 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 CYP51A1P3-201ENST00000400072 1428 ntBASIC14.6□□□□□ -0.07
BDNFP23560 AL365181.1-201ENST00000564032 1828 ntBASIC14.6□□□□□ -0.07
BDNFP23560 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
BDNFP23560 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.6□□□□□ -0.07
BDNFP23560 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.6□□□□□ -0.07
BDNFP23560 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC14.6□□□□□ -0.07
BDNFP23560 RN7SL556P-201ENST00000582856 298 ntBASIC14.6□□□□□ -0.07
BDNFP23560 AC009084.3-201ENST00000623356 437 ntBASIC14.6□□□□□ -0.07
BDNFP23560 AC138466.5-201ENST00000624002 808 ntBASIC14.6□□□□□ -0.07
BDNFP23560 RCC2P5-201ENST00000492126 1487 ntBASIC14.6□□□□□ -0.07
BDNFP23560 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.6□□□□□ -0.07
BDNFP23560 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
BDNFP23560 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BDNFP23560 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
BDNFP23560 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
BDNFP23560 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC14.59□□□□□ -0.07
BDNFP23560 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.59□□□□□ -0.07
BDNFP23560 MIR3940-201ENST00000579148 102 ntBASIC14.59□□□□□ -0.07
BDNFP23560 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC14.59□□□□□ -0.07
BDNFP23560 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
BDNFP23560 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
BDNFP23560 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
BDNFP23560 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.58□□□□□ -0.07
BDNFP23560 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
BDNFP23560 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms