Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KLK8-203ENST00000347619 555 ntTSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 SNORA30.1-201ENST00000363193 129 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC12.88□□□□□ -0.35
COL5A1P20908 RNASEH2CP1-201ENST00000454281 502 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 RN7SL479P-201ENST00000472003 300 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 RN7SL47P-201ENST00000488710 299 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 FTH1-205ENST00000529631 507 ntTSL 4 BASIC12.88□□□□□ -0.35
COL5A1P20908 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 TLE2-205ENST00000586422 389 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AC244097.1-201ENST00000621631 1216 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 CR392039.2-201ENST00000623182 509 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 FRG2EP-201ENST00000634243 835 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL5A1P20908 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 RN7SL69P-201ENST00000468423 272 ntBASIC12.87□□□□□ -0.35
COL5A1P20908 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC12.87□□□□□ -0.35
COL5A1P20908 GOLGA2P10-201ENST00000550961 817 ntBASIC12.87□□□□□ -0.35
COL5A1P20908 AC104759.1-201ENST00000559109 939 ntBASIC12.87□□□□□ -0.35
COL5A1P20908 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 TPST2P1-201ENST00000564073 1102 ntBASIC12.87□□□□□ -0.35
COL5A1P20908 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL5A1P20908 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL5A1P20908 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 RPL4P6-201ENST00000438116 1304 ntBASIC12.87□□□□□ -0.35
COL5A1P20908 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL5A1P20908 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.87□□□□□ -0.35
COL5A1P20908 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC12.87□□□□□ -0.35
COL5A1P20908 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL5A1P20908 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 GBAP1-208ENST00000566701 1546 ntBASIC12.86□□□□□ -0.35
COL5A1P20908 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL5A1P20908 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL5A1P20908 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC12.86□□□□□ -0.35
COL5A1P20908 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC12.86□□□□□ -0.35
COL5A1P20908 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 PTPA-219ENST00000435305 530 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC12.86□□□□□ -0.35
COL5A1P20908 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC12.86□□□□□ -0.35
COL5A1P20908 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC12.86□□□□□ -0.35
COL5A1P20908 HCG11-201ENST00000411553 5696 ntBASIC12.86□□□□□ -0.35
COL5A1P20908 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL5A1P20908 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms