Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
RSPO3Q9BXY4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 FNTAP2-201ENST00000430308 634 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PFN2-206ENST00000461930 606 ntTSL 4 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AC114947.1-202ENST00000514136 344 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 MIR4265-201ENST00000582152 99 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AC091769.1-201ENST00000619576 568 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AC009560.1-201ENST00000620208 434 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 AL031587.5-201ENST00000624344 1849 ntBASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
RSPO3Q9BXY4 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 PCDHB17P-202ENST00000623466 3066 ntBASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 CFAP65-204ENST00000410037 2703 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 MIR557-201ENST00000385239 98 ntBASIC12.65□□□□□ -0.38
RSPO3Q9BXY4 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms