Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 Z98257.2-202ENST00000641138 1548 ntBASIC12.31□□□□□ -0.44
SOX2P48431 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.31□□□□□ -0.44
SOX2P48431 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SOX2P48431 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SOX2P48431 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 AC144522.1-201ENST00000625111 1658 ntBASIC12.3□□□□□ -0.44
SOX2P48431 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
SOX2P48431 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.3□□□□□ -0.44
SOX2P48431 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.3□□□□□ -0.44
SOX2P48431 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.3□□□□□ -0.44
SOX2P48431 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 AC003686.1-201ENST00000550956 1034 ntBASIC12.3□□□□□ -0.44
SOX2P48431 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 AC100827.2-201ENST00000563214 1194 ntBASIC12.3□□□□□ -0.44
SOX2P48431 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
SOX2P48431 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 SHMT1P1-201ENST00000419974 1312 ntBASIC12.3□□□□□ -0.44
SOX2P48431 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SOX2P48431 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 CYP4F23P-201ENST00000593402 1579 ntBASIC12.3□□□□□ -0.44
SOX2P48431 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SOX2P48431 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC12.3□□□□□ -0.44
SOX2P48431 PI4KAP2-201ENST00000360806 2080 ntBASIC12.3□□□□□ -0.44
SOX2P48431 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 AGGF1P10-201ENST00000635005 2191 ntBASIC12.29□□□□□ -0.44
SOX2P48431 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
SOX2P48431 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
SOX2P48431 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SOX2P48431 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms