Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 CIDECP-203ENST00000424691 1088 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 AC103706.1-201ENST00000561761 679 ntBASIC13.8□□□□□ -0.2
VCANP13611 AC005154.1-217ENST00000584199 581 ntTSL 4 BASIC13.8□□□□□ -0.2
VCANP13611 AP001120.3-201ENST00000585729 489 ntBASIC13.8□□□□□ -0.2
VCANP13611 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 LINC01230-201ENST00000625222 3017 ntBASIC13.8□□□□□ -0.2
VCANP13611 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC13.8□□□□□ -0.2
VCANP13611 CXXC1P1-202ENST00000489409 1212 ntBASIC13.8□□□□□ -0.2
VCANP13611 HP-215ENST00000569639 568 ntTSL 4 BASIC13.8□□□□□ -0.2
VCANP13611 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VCANP13611 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.8□□□□□ -0.2
VCANP13611 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 SERF1A-209ENST00000513436 1693 ntTSL 3 BASIC13.79□□□□□ -0.2
VCANP13611 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 FAM9A-201ENST00000381003 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 KCNK16-202ENST00000373229 1248 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 SNORA9B-201ENST00000384170 133 ntBASIC13.79□□□□□ -0.2
VCANP13611 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 AC022483.2-201ENST00000461464 555 ntBASIC13.79□□□□□ -0.2
VCANP13611 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.79□□□□□ -0.2
VCANP13611 AP005018.2-201ENST00000528464 822 ntBASIC13.79□□□□□ -0.2
VCANP13611 AL606834.1-201ENST00000553836 1169 ntBASIC13.79□□□□□ -0.2
VCANP13611 AC018868.2-201ENST00000559655 1259 ntBASIC13.79□□□□□ -0.2
VCANP13611 MIR4539-201ENST00000579784 60 ntBASIC13.79□□□□□ -0.2
VCANP13611 KRTAP10-9-203ENST00000616529 615 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 AL117379.1-201ENST00000619319 677 ntBASIC13.79□□□□□ -0.2
VCANP13611 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 AC018442.1-201ENST00000421439 2061 ntBASIC13.79□□□□□ -0.2
VCANP13611 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 SEC14L2-201ENST00000402592 1229 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 AL356488.1-201ENST00000429752 609 ntBASIC13.79□□□□□ -0.2
VCANP13611 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC13.79□□□□□ -0.2
VCANP13611 MTND6P9-201ENST00000458075 519 ntBASIC13.79□□□□□ -0.2
VCANP13611 AC091893.1-201ENST00000503772 399 ntBASIC13.79□□□□□ -0.2
VCANP13611 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 PROX1-AS1-205ENST00000598091 720 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 AL136084.3-201ENST00000605631 439 ntBASIC13.79□□□□□ -0.2
VCANP13611 ADGRG5-207ENST00000615867 762 ntTSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 AL139035.1-202ENST00000626308 565 ntTSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
VCANP13611 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 IGLV3-22-201ENST00000390307 409 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
VCANP13611 OR10V2P-201ENST00000525296 764 ntBASIC13.79□□□□□ -0.2
VCANP13611 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.79□□□□□ -0.2
VCANP13611 CD63-212ENST00000552067 621 ntTSL 5 BASIC13.79□□□□□ -0.2
VCANP13611 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VCANP13611 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
VCANP13611 AC245140.2-201ENST00000624054 1939 ntBASIC13.78□□□□□ -0.2
VCANP13611 GOLGA6L2-202ENST00000345070 1972 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
VCANP13611 JAML-211ENST00000533261 1508 ntTSL 5 BASIC13.78□□□□□ -0.2
VCANP13611 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.78□□□□□ -0.2
VCANP13611 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VCANP13611 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms