Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 EHMT1-210ENST00000478940 591 ntTSL 4 BASIC13.74□□□□□ -0.21
COL6A3P12111 Metazoa_SRP.68-201ENST00000612673 282 ntBASIC13.74□□□□□ -0.21
COL6A3P12111 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL6A3P12111 TRMT61B-201ENST00000306108 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 AL662907.1-201ENST00000622988 1360 ntBASIC13.74□□□□□ -0.21
COL6A3P12111 CICP16-201ENST00000502609 2813 ntBASIC13.74□□□□□ -0.21
COL6A3P12111 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL6A3P12111 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 AC010997.3-201ENST00000418818 502 ntTSL 3 BASIC13.74□□□□□ -0.21
COL6A3P12111 BMF-203ENST00000431415 492 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 RAD52-212ENST00000541619 560 ntTSL 4 BASIC13.74□□□□□ -0.21
COL6A3P12111 AC079601.2-201ENST00000547729 775 ntBASIC13.74□□□□□ -0.21
COL6A3P12111 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL6A3P12111 MEF2C-207ENST00000503554 1345 ntTSL 5 BASIC13.74□□□□□ -0.21
COL6A3P12111 APTX-206ENST00000379825 2023 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 TMLHE-201ENST00000334398 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 SLC29A3-201ENST00000373189 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 CCDC70-201ENST00000242819 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 AC010240.1-201ENST00000429606 459 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 RPE-208ENST00000436630 1128 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 GPR12-201ENST00000381436 1981 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
COL6A3P12111 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 ZNF726-204ENST00000531821 1798 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 THUMPD1P1-201ENST00000400014 1041 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 SUMF1-203ENST00000405420 1128 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 ATP6AP2-202ENST00000423649 1093 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 FTLP16-201ENST00000446400 513 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 FGF11-205ENST00000575398 990 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 FAM156A-223ENST00000623782 1931 ntAPPRIS P2 TSL 3 BASIC13.73□□□□□ -0.21
COL6A3P12111 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 HSPA8P5-201ENST00000456928 2069 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 FTO-214ENST00000636218 2227 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A3P12111 HNRNPH1P1-201ENST00000403291 1185 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 PDHX-202ENST00000430469 952 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A3P12111 AC003958.1-201ENST00000435883 421 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 AC234582.2-201ENST00000455788 568 ntTSL 3 BASIC13.73□□□□□ -0.21
COL6A3P12111 RN7SL313P-201ENST00000497618 288 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 AC020897.1-201ENST00000587702 561 ntTSL 4 BASIC13.73□□□□□ -0.21
COL6A3P12111 AC106774.4-201ENST00000600799 409 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 MIR6511B1-201ENST00000612014 85 ntBASIC13.73□□□□□ -0.21
COL6A3P12111 DANCR-205ENST00000623036 748 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 NCR1-205ENST00000594765 1612 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
COL6A3P12111 WDR78-202ENST00000371023 1697 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A3P12111 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 IL36A-201ENST00000259211 888 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 AL355994.4-201ENST00000416882 563 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 IGF2BP1-202ENST00000431824 1317 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 COQ5-202ENST00000445328 992 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A3P12111 GPAT2P2-201ENST00000445404 863 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 RN7SL150P-201ENST00000462298 262 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 CCNH-203ENST00000504878 1497 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 HNRNPA1P55-201ENST00000505935 955 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 TBC1D21-203ENST00000562056 965 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL6A3P12111 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
COL6A3P12111 AC111170.3-201ENST00000624282 2464 ntBASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms